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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_017730-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 260aa MW: 29550.9 Da PI: 8.9337 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 82.5 | 7.3e-26 | 79 | 160 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
fY++YA++vGF +r+s+ +sk +g +++r++vC+keg+++ + k+ + a+tr gCka++++k+ek gkw ++k+e++HnH+l
NNU_017730-RA 79 FYEAYARRVGFVTRVSTYCRSKIDGAVISRRLVCNKEGFKKGKIKR------PLAVTREGCKAMVNLKREKPGKWIISKFEKDHNHPL 160
9**************************************9997666......**********************************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.9E-23 | 79 | 161 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 260 aa Download sequence Send to blast |
MDLGSPMSDN DEMIENSLGR DLHEGEMIES SIIRHPHVGE DGEVIENPAG TGPVAHERDE 60 NLEPYEGMAF ESEETAKAFY EAYARRVGFV TRVSTYCRSK IDGAVISRRL VCNKEGFKKG 120 KIKRPLAVTR EGCKAMVNLK REKPGKWIIS KFEKDHNHPL LISSKVRRGS LQNRSAEDAK 180 KIRELSYQLH RANKKCTVYR EHLDMVLKDI EEHTHHLSEK VKDIVRIPIP PKVFKIGLCI 240 RAAHAAKHRS TTESPTMMEA |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010273197.1 | 1e-166 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A1U8AYF1 | 1e-165 | A0A1U8AYF1_NELNU; protein FAR1-RELATED SEQUENCE 5-like | ||||
| STRING | XP_010273197.1 | 1e-166 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G07500.1 | 2e-59 | FAR1 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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