PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017818-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 477aa    MW: 53252.1 Da    PI: 6.0347
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017818-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.48.1e-143494721374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lLl+cA++v++g+le a+  L+++s+lasp+gd+mqR+aayfteALa r+++ +++l +al++++ +  + se + +++lf+e++P+lk++ +
  NNU_017818-RA  49 LIHLLLSCANHVATGNLEHANIGLEQISHLASPEGDTMQRIAAYFTEALADRILKAWPGLHRALNSTKLA--SISEGILVRRLFFELCPFLKVAIV 142
                    689*************************************************************999998..599********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    ++NqaI ea+ege++vHiiD+   +++QW+aL+qaL++Rpegpp+lRiTg+++    +ke le+t+ rL++ Ae+l++pf+fn+ ++++l++l++e
  NNU_017818-RA 143 ITNQAIIEAMEGEKMVHIIDLHCAEPAQWVALIQALSARPEGPPHLRITGIHE----QKEVLEQTALRLTEEAEKLDIPFQFNP-IVSKLDNLDVE 233
                    *****************************************************....9**************************.7999******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll.........................................................desvsleserdevLklv 231
                    +Lrvk+gEala+++vlqlh+ll                                                           s++ + +++++L ++
  NNU_017818-RA 234 SLRVKTGEALAISSVLQLHSLLatndetlskkspplarntnsvhplhrvlqmnqstlgdllekdlvngyspspdsasssPPSLPASAKIENFLAAL 329
                    ***************************************************************************9966333333336788***** PP

           GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                    ++lsPk++vv+eqe++hn+++++er+leal++y++lfd+le++++r+s er+kvE++l+g+ei+n++acegaer+erhe+le W +rl++aGF+ v
  NNU_017818-RA 330 WGLSPKLMVVTEQESNHNGSTLMERLLEALYFYASLFDCLESTVSRASMERMKVEKMLFGEEIKNIIACEGAERKERHEKLEIWIQRLDSAGFGRV 425
                    ************************************************************************************************ PP

           GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    pls++ + qa++ll+ ++ dgy+++ee+g+lv++W++r+L+svS+Wr
  NNU_017818-RA 426 PLSYYGQLQARRLLQSYGCDGYKIKEENGCLVICWQERALFSVSSWR 472
                    **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.2423452IPR005202Transcription factor GRAS
PfamPF035142.8E-14049472IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAGMVQDEGS SSVTSSPLQF FSLMSLSPSL GSPYPWLREL KSEERGLYLI HLLLSCANHV  60
ATGNLEHANI GLEQISHLAS PEGDTMQRIA AYFTEALADR ILKAWPGLHR ALNSTKLASI  120
SEGILVRRLF FELCPFLKVA IVITNQAIIE AMEGEKMVHI IDLHCAEPAQ WVALIQALSA  180
RPEGPPHLRI TGIHEQKEVL EQTALRLTEE AEKLDIPFQF NPIVSKLDNL DVESLRVKTG  240
EALAISSVLQ LHSLLATNDE TLSKKSPPLA RNTNSVHPLH RVLQMNQSTL GDLLEKDLVN  300
GYSPSPDSAS SSPPSLPASA KIENFLAALW GLSPKLMVVT EQESNHNGST LMERLLEALY  360
FYASLFDCLE STVSRASMER MKVEKMLFGE EIKNIIACEG AERKERHEKL EIWIQRLDSA  420
GFGRVPLSYY GQLQARRLLQ SYGCDGYKIK EENGCLVICW QERALFSVSS WRCRRYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-48494724375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273289.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1U8AYC00.0A0A1U8AYC0_NELNU; scarecrow-like protein 3
STRINGXP_010273289.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]