PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017975-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 247aa    MW: 28371.5 Da    PI: 7.6372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017975-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.12.3e-181562148
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                   kri+ +  r+vtfskR+ gi+KKA+ L +LC+ae a+i+fs+ g+ + 
  NNU_017975-RA 15 KRIDREDCRNVTFSKRKSGIFKKASDLVTLCGAETAIIMFSPGGNAFS 62
                   78999999**********************************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-26766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-24778IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.45767IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-17929IPR002100Transcription factor, MADS-box
PfamPF003198.0E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLKKTAKGRQ KIEIKRIDRE DCRNVTFSKR KSGIFKKASD LVTLCGAETA IIMFSPGGNA  60
FSFGHPKVEH VIDRFLTQET IPEDGTGTLP PVDESYHEVA MSELNRQYNE LRNQLEAEEK  120
RRKMLEKKIK ANQAQSWWES DIEKVSLHEL ERLKVAMENL KYSLVNKTDE LLMESSSSLS  180
PFLAINSLVN PFIHQSTRNN TCIISHGHDF FSRINWDFEM VFDAKGIASF MAWIFGLRST  240
DSISLFM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273610.11e-154PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8BAW61e-152A0A1U8BAW6_NELNU; agamous-like MADS-box protein AGL62
STRINGXP_010273610.11e-153(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-40AGAMOUS-like 62