PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017998-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 252aa    MW: 28831.5 Da    PI: 5.0163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017998-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.8e-1464106754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A+eYI++L
  NNU_017998-RA  64 LSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQQL 106
                    57*********************66......*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.53357106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1859121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.90E-1361111No hitNo description
SMARTSM003533.0E-1663112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1663121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1163106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MENIENIENI ENIDEYSHYW ETKRFIQNEE LDSWALDEAF SSYYDSSSPE GTATASSIAA  60
KNILSERNRR KKLNERLFAL RSVVPNISKM DKASIIKDAI EYIQQLHEQE RTIQAEILEL  120
ESGKFKNSPV SDVEQTSVYS RKKKKRIDQC YDSGGSRACS IEVLEIRVSY VGDRTLVISL  180
TCSRKTDTMV KLCEVFESLK LKIISANITA FSGRLLKTVF VEADEEEKEQ LKIRIETAIA  240
ALNHDPQNPV SY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273597.10.0PREDICTED: transcription factor bHLH35
SwissprotQ2HIV91e-85BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1U8B2W90.0A0A1U8B2W9_NELNU; transcription factor bHLH35
STRINGXP_010273597.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-89bHLH family protein