PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018143-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24191 Da    PI: 4.7514
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018143-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-181266256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++f++eq++ Le+ Fe ++++ ++++ +LA++l+L+ rq+++WFqN+Ra+ k
  NNU_018143-RA 12 TNKRRFSTEQITLLESIFETESKLETQKKLQLARQLSLQPRQISIWFQNKRARCK 66
                   56789************************************************98 PP
2HD-ZIP_I/II112.42.9e-3613104293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +krr+s+eq++lLE+ Fe+e+kLe+++K +lar+L lqprq+ +WFqn+RAR k+kql +dy+ L+++yd l+++ ++L+ke+++L++el++
  NNU_018143-RA  13 NKRRFSTEQITLLESIFETESKLETQKKLQLARQLSLQPRQISIWFQNKRARCKSKQLQQDYAILRANYDVLASRFDSLNKEKQSLQTELQK 104
                    79**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.487868IPR001356Homeobox domain
SuperFamilySSF466891.28E-171080IPR009057Homeodomain-like
SMARTSM003893.9E-151072IPR001356Homeobox domain
CDDcd000865.95E-141169No hitNo description
PfamPF000463.8E-151266IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-171475IPR009057Homeodomain-like
PROSITE patternPS0002704366IPR017970Homeobox, conserved site
PfamPF021836.9E-1668109IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDSLSMTCIT KTNKRRFSTE QITLLESIFE TESKLETQKK LQLARQLSLQ PRQISIWFQN  60
KRARCKSKQL QQDYAILRAN YDVLASRFDS LNKEKQSLQT ELQKLRGLMD ELEEDRRGSG  120
SDFSGNGTHG SSNDDKQDAQ QESQVKSSLL PESPNRMVLG LCDDQQNEIF RDYPQPQEEA  180
ALVNVIEPAN AFISGDLFQL SFNDALWWEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273803.11e-153PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBLA0A1U8BBB51e-152A0A1U8BBB5_NELNU; homeobox-leucine zipper protein ATHB-7-like
STRINGXP_010273803.11e-153(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-43homeobox 7