PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018165-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 402aa    MW: 44859.2 Da    PI: 4.5248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018165-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19108157255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  NNU_018165-RA 108 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 157
                    69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.57E-33108166No hitNo description
SMARTSM003808.9E-38108171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32108167IPR001471AP2/ERF domain
PROSITE profilePS5103224.092108165IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22108166IPR016177DNA-binding domain
PfamPF008479.3E-12109157IPR001471AP2/ERF domain
PRINTSPR003671.2E-11109120IPR001471AP2/ERF domain
PRINTSPR003671.2E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MCGGAIISDF IPTSRTRRVT ADYLWPDLKN TTSGDYYSKP RRSEIDDLEE DFEADFQEFK  60
DESEEEEEDI KPILLNSKPG LSRGSTTVKS VEVSGPAEKS AKRKRKNQYR GIRQRPWGKW  120
AAEIRDPRKG VRVWLGTFNT AEEAARAYDA EARRIRGKKA KVNFPEEAPQ TAQKHTSKPN  180
PQNVLSKPNS VSEKHSFNFT NNPDANFYDT MGFVEEKTSI KGSGYMSSFP VIGNPAEFKP  240
FAFNSDQESN SFSCSDFSWG DQEPKTPEIS SVLSTAIESD GSEFLEDANP KKKLRTGSEG  300
VAPIEESTPN TLSEELSAFX SQMKFLQMPY LEGSWDASID SLFSGEPTQD AENSIDLWSF  360
DDLVPPTVGG MVVGDEMGEQ TVGNLERQFY QGWSVLQAAL GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21108165260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A9e-211071671374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289295PKKKLRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0947412e-69BT094741.1 Soybean clone JCVI-FLGm-25A1 unknown mRNA.
GenBankEU6812782e-69EU681278.1 Glycine max EREBP/AP2 transcription factor mRNA, complete cds.
GenBankKT0310752e-69KT031075.1 Glycine max clone HN_CCL_34 AP2-EREBP transcription factor (Glyma03g42450.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273830.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1U8BBE00.0A0A1U8BBE0_NELNU; ethylene-responsive transcription factor RAP2-12-like
STRINGXP_010273830.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-77related to AP2 12