PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018204-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 448aa MW: 51774.5 Da PI: 9.3522

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018204-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	429	448	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+ + G C+yGdrCk+ H+ NNU_018204-RA 429 CWFYPQ-GRCRYGDRCKYLHD 448 555666.*************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF68906	1.63E-7	91	137	No hit	No description
Gene3D	G3DSA:1.10.720.30	2.0E-9	91	137	IPR003034	SAP domain
PROSITE profile	PS50800	10.266	102	136	IPR003034	SAP domain
SMART	SM00513	9.4E-4	102	136	IPR003034	SAP domain
Pfam	PF02037	1.0E-8	102	136	IPR003034	SAP domain
Gene3D	G3DSA:4.10.1000.10	2.7E-5	424	448	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.831	424	448	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-5	426	448	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEVSDRELQA VEEDHSKNGG SETENYDSDD SEEDPTYDII EETRSSFSRF SINKTKSRTV 60 QKKMDLGSED ELDDAEIKVP ELEEKDEKSF EKVQKLIQAG KLEKLKVEDC KVYLRKNGLR 120 LTGKKDLLIQ RIREHLEIMD GGGEKKYPLS SFVLNCKGDA CTGDVVMFEQ NVYEMYNIAS 180 RSATGPSIGT RTVVGRIVKE SYGAAKQQHT FTIEVLWSKG VKPLPPLHPL LIKGRNLYKL 240 KTMRQVWSNE EERRKILLEK HSRGSIARSK REARIQEKET RKKIREGQSI ARKETGTIRS 300 IQSREQQQQP HMGKVSPQEQ PPKSDFIEVI QHQCAIPQSF TGIFQRQPQA TPTEPMGLQS 360 RHIRDQRTTN IPDIRNQQSK GFPIASRQHP HANEQPSERF HHRQPLASLN SYFPQRTLQR 420 QGCLQLQPCW FYPQGRCRYG DRCKYLHD

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEVSDRELQA VEEDHSKNGG SETENYDSDD SEEDPTYDII EETRSSFSRF SINKTKSRTV  60
QKKMDLGSED ELDDAEIKVP ELEEKDEKSF EKVQKLIQAG KLEKLKVEDC KVYLRKNGLR  120
LTGKKDLLIQ RIREHLEIMD GGGEKKYPLS SFVLNCKGDA CTGDVVMFEQ NVYEMYNIAS  180
RSATGPSIGT RTVVGRIVKE SYGAAKQQHT FTIEVLWSKG VKPLPPLHPL LIKGRNLYKL  240
KTMRQVWSNE EERRKILLEK HSRGSIARSK REARIQEKET RKKIREGQSI ARKETGTIRS  300
IQSREQQQQP HMGKVSPQEQ PPKSDFIEVI QHQCAIPQSF TGIFQRQPQA TPTEPMGLQS  360
RHIRDQRTTN IPDIRNQQSK GFPIASRQHP HANEQPSERF HHRQPLASLN SYFPQRTLQR  420
QGCLQLQPCW FYPQGRCRYG DRCKYLHD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010273889.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 62-like
TrEMBL	A0A1U8BBJ1	0.0	A0A1U8BBJ1_NELNU; zinc finger CCCH domain-containing protein 62-like
STRING	XP_010273889.1	0.0	(Nelumbo nucifera)