PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018235-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRF
Protein Properties Length: 372aa    MW: 42107.6 Da    PI: 8.9553
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018235-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.65.9e-2574117144
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                    d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e
  NNU_018235-RA  74 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGRNRSRKPVE 117
                    79***************************************987 PP
2QLQ65.61.2e-22844137
            QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                   s+FTa+Q+q+L++Q+l++Ky+++++PvPpeL+++i++
  NNU_018235-RA  8 SPFTASQWQELEHQALIFKYMVSGVPVPPELIFPIKR 44
                   89*********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-14844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-17942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.884944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.50274118IPR014977WRC domain
PfamPF088791.8E-2175117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMSARNGSPF TASQWQELEH QALIFKYMVS GVPVPPELIF PIKRSLDASI SSRLFPHQPI  60
GWGCFQMGFG RKPDPEPGRC RRTDGKKWRC SKEAFPDSKY CERHMHRGRN RSRKPVEVIT  120
ANPSTTISSL SRNPSTITTN TNTTASSYSL SSQVAAADAH HQHHSYYNTS LHPLLYPHSS  180
SSRPPGIGFL HQNNSTHLLL DSGSYSQQGN KDYRYFNGLK GEVDERAFFS EASGTTRSAP  240
DSSSLDNSWR FTPLDQSKQR NSSGLQGCYS QLQLQSLTDI SKQQKHQQEQ HCFVLGTDFK  300
SERPLKLEKE EEPQQPLRHF FDEWPPKSRD SWLDLEDNRS NRSSFSTTQL SISIPMPSSD  360
FAVSNSRTQN DG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4680352e-66AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273921.10.0PREDICTED: growth-regulating factor 1
TrEMBLA0A1U8B3P10.0A0A1U8B3P1_NELNU; growth-regulating factor 1
STRINGXP_010273920.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-66growth-regulating factor 5