PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018237-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 594aa    MW: 65402.6 Da    PI: 7.1027
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018237-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.2e-12260316155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  NNU_018237-RA 260 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 316
                    78*******************433.44555535555.779999**************98 PP
2AP2483.1e-15359410155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  NNU_018237-RA 359 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 410
                    78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.36E-19260326No hitNo description
SuperFamilySSF541719.81E-15260326IPR016177DNA-binding domain
PfamPF008475.2E-9260316IPR001471AP2/ERF domain
SMARTSM003804.8E-23261330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12261325IPR001471AP2/ERF domain
PROSITE profilePS5103217.332261324IPR001471AP2/ERF domain
PRINTSPR003671.4E-6262273IPR001471AP2/ERF domain
CDDcd000184.43E-25359420No hitNo description
SuperFamilySSF541719.81E-18359420IPR016177DNA-binding domain
PfamPF008476.1E-10359410IPR001471AP2/ERF domain
SMARTSM003802.6E-34360424IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-18360418IPR001471AP2/ERF domain
PROSITE profilePS5103219.006360418IPR001471AP2/ERF domain
PRINTSPR003671.4E-6400420IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MSNWLGFSLT PHLSIDEGFG EGEGGFSSHL SVMPLRSDGS LCVMDPFRRS HGGDWRYEST  60
MATATNPERE GPKLEDFLGG YSNSSQDNNN VYYQSQQQSF HQRGQNPDSG CGINVNVPPT  120
FNNNGERERE ENPTDQSSLI QSFHYNENPH AILPTVHLQA TNPNPNPGNS LYHVPLDSAT  180
SISGFKSWLR QTPFSGEKSS AEANCNFQSL SLSMNPGSQT GVPGLASSPG SDNRKRQVGK  240
AVNREPVPRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQGGYDKE  300
EKAARAYDLA ALKYWGPTTH INFPLSTYEK ELEEMKNMTR QEFVAHLRRK SSGFSRGASV  360
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS  420
KYDVKRICSS TTLITSDLAK RSPNPKDSAP IIPDDQNSSV SSAPPQPPLA ITNGGPSDEL  480
ADMVWTNGDE QQHQQNLNAN ESASLIPSMS NPNSSNPQSP KHTLASHSDF AVAGGDFSQT  540
LFSLHTPKYE NGATNSGEHS TSNGGSDNVN WMVAGRSGSL PVVHQLPMFA LWNE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273924.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-133AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1U8B0270.0A0A1U8B027_NELNU; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_010273924.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-129AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]