PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018260-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YA
Protein Properties Length: 311aa    MW: 33449.6 Da    PI: 8.4582
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018260-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.8e-32159215158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    dep+YVNaKQy++Il+RRq+Rakle+++kl  ksrk ylheSRh hAl+R+RgsgGrF
  NNU_018260-RA 159 DEPIYVNAKQYRGILRRRQSRAKLEAQNKL-VKSRKAYLHESRHLHALKRARGSGGRF 215
                    79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.6E-36157218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.01158218IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.0E-27160215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-22161183IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860163183IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-22192215IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPASSLSKSL ILKMDAQSQH CHNIKKLGLQ SQEQDSSSTQ STGQSHHEVE AVGSGHNGQC  60
ISEQSGLTES YGKQAGGHIK PVLSLGTPDL VVPSQIDYSQ SVACIPYPYA EPYLSGYLTA  120
YVPQTVVRDN VISASLLIHP QMIGMVPARI PLPLGLSEDE PIYVNAKQYR GILRRRQSRA  180
KLEAQNKLVK SRKAYLHESR HLHALKRARG SGGRFLNIKQ LQESKPTAPV GGHDVSDSAS  240
LQQGGTQSES EVHQSDTGTA GGSAPYCSDV TSDESCLQFS VYPAQSEIGS SMQGGVGIMR  300
NGSQVRVPVM R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21159220263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273959.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_010273960.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLA0A1U8AZY60.0A0A1U8AZY6_NELNU; nuclear transcription factor Y subunit A-3-like
STRINGXP_010273959.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-44nuclear factor Y, subunit A3