PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018275-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 641aa    MW: 71507.4 Da    PI: 8.5315
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018275-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.52e-25209261255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     r++Wt+eLH++F++av++L G ekA Pk+ile m++ gLt+e+++SHLQkYR+
  NNU_018275-RA 209 SRVVWTTELHQQFLDAVKKL-GYEKAMPKKILEQMGISGLTRENIASHLQKYRI 261
                    79******************.9*******************************6 PP
2Response_reg81.62.6e-27231331109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE..EEESTTTHHHHHHHHHT CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii..vvtahgeeedalealka 92 
                    vlivdD+ + +++++ +l+  +y +v ++++g +al +l+e++  +Dl+l+D+ mpgmdG++llk+i +e  klp+i  +++a ++e+ +l++lka
  NNU_018275-RA  23 VLIVDDDAICLKVVEAILRILKY-QVVAVKNGLDALSILQERKggFDLVLTDVYMPGMDGITLLKHIMAEF-KLPVIseFMSADDKENVILKCLKA 116
                    8**********************.9999**************99***********************7777.78888779**************** PP

                    TESEEEESS--HHHHHH CS
   Response_reg  93 GakdflsKpfdpeelvk 109
                    Ga+ ++ Kp+ ++++++
  NNU_018275-RA 117 GASYYIKKPITMNDVRN 133
                    **********9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.54E-3220139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.8E-3721157No hitNo description
SMARTSM004482.3E-2921135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.98822139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-2423133IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.20E-3024138No hitNo description
SuperFamilySSF466891.08E-18205265IPR009057Homeodomain-like
PROSITE profilePS5129414.977205264IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-26206266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24209261IPR006447Myb domain, plants
PfamPF002491.8E-9210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MESEIAQAAQ SSNTKTFPAE LRVLIVDDDA ICLKVVEAIL RILKYQVVAV KNGLDALSIL  60
QERKGGFDLV LTDVYMPGMD GITLLKHIMA EFKLPVISEF MSADDKENVI LKCLKAGASY  120
YIKKPITMND VRNLWQHVVL KRKETIMEPE RTRSIEGESD QSVFREDIEC VSSVNEGNWK  180
KGTKRNTTSS NDNKVVEVGK SVSFTTKRSR VVWTTELHQQ FLDAVKKLGY EKAMPKKILE  240
QMGISGLTRE NIASHLQKYR IFLKRLKQAS QAPEPSVARS LISKSSFAVG HPSLVLHLQG  300
RLPELQDTQQ FTGMSFRPRH GSSPMSQLHE HSISASNQGN LKKSNFLESS LDQRNGTKHS  360
GFEVRSHIVT TSSLLGDTSN SHRSGEDIVQ MNHQQPQMQS RPFASSSLVN RNMGSSNNHN  420
QVPYFNYTNY NHAGIQIASA GEPVGFGKTV LFANRPSKSM SGSYNSMNEM QKGKGIVTAT  480
GKYPPFLEFG SFRSGFSPQG LDSSCGSQCA NHFQMMFPCV IQKQQPSIQS FLNVSNQQQQ  540
QSLVPSFPNV IQKQQLPLPL QPLPEQKRPN LTEFESELDS LLDLVTSSPD IENTSAMQPF  600
DEINDLCAIL NQVDQDDQAC TMLIYLKPVL IFFTVGKMAS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17207266463ARR10-B
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274080.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A1U8BCS50.0A0A1U8BCS5_NELNU; two-component response regulator ARR14-like
STRINGXP_010274080.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-71response regulator 2