PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018333-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 171aa    MW: 18657.3 Da    PI: 8.2889
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018333-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.21.3e-43131141100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk..alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                    +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l+  +lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++l
  NNU_018333-RA  13 PCAACKLLRRRCATDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQmqELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQL 108
                    7********************************************8622679******************************************** PP

         DUF260  95 allkee 100
                    al+++e
  NNU_018333-RA 109 ALAQAE 114
                    *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.28412115IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-4313112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKESGRKQGA TSPCAACKLL RRRCATDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQM  60
QELPVHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ VDVLQTQLAL AQAEVIHMRM  120
RQAASTSNLT VGSSDCTSPS PNKLVIPHSK SFFALDMVVD QTSFGESLWS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4991167112LOB family transfactor Ramosa2.1
5ly0_B1e-4991167112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274089.11e-122PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE93e-76LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A1U8B4231e-121A0A1U8B423_NELNU; LOB domain-containing protein 4
STRINGXP_010274089.11e-122(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-70LOB domain-containing protein 4