PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018415-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 137aa    MW: 15509.8 Da    PI: 8.896
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018415-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.22.4e-3761051100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+lrr+C++dC+la yfp+++p++fa+vhk+FGasn++k+l++lp ++r  a++++++eA  r+rdPvyG v++i++l+qq+  ++ ela+
  NNU_018415-RA   6 RCAACKYLRRRCSHDCILASYFPSTNPERFACVHKIFGASNITKILQQLPVHQRAVAADCMFFEAGSRVRDPVYGFVAIISQLHQQIIITQRELAE 101
                    6**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    ++ +
  NNU_018415-RA 102 TQGQ 105
                    9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.9715106IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-366103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MANSTRCAAC KYLRRRCSHD CILASYFPST NPERFACVHK IFGASNITKI LQQLPVHQRA  60
VAADCMFFEA GSRVRDPVYG FVAIISQLHQ QIIITQRELA ETQGQIAFYG AQQVQGLKQK  120
TESRIQYNET MCFNASQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-34711712122LOB family transfactor Ramosa2.1
5ly0_B6e-34711712122LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270541.16e-85PREDICTED: LOB domain-containing protein 12-like isoform X1
RefseqXP_010270542.15e-85PREDICTED: LOB domain-containing protein 24-like isoform X2
SwissprotP594687e-41LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1U8ARK51e-83A0A1U8ARK5_NELNU; LOB domain-containing protein 12-like isoform X1
TrEMBLA0A1U8AS081e-83A0A1U8AS08_NELNU; LOB domain-containing protein 24-like isoform X2
STRINGXP_010270541.12e-84(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-43LOB domain-containing protein 24