PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018421-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 464aa    MW: 51563.2 Da    PI: 6.6761
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018421-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.5e-22200246349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                    i+ k   qvtfskRr g++KKA+EL++LC++e+avi+fs+ gkl+ +
  NNU_018421-RA 200 IKLKKHLQVTFSKRRGGLFKKASELCILCGVEIAVIVFSPAGKLFSF 246
                    6667788*************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508798.69529158IPR002156Ribonuclease H domain
SuperFamilySSF530982.28E-933158IPR012337Ribonuclease H-like domain
CDDcd062222.08E-2036154No hitNo description
PfamPF134569.8E-1436156No hitNo description
SuperFamilySSF554552.22E-27190268IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-32190249IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.74190250IPR002100Transcription factor, MADS-box
CDDcd002652.21E-33191259No hitNo description
PRINTSPR004042.0E-18192212IPR002100Transcription factor, MADS-box
PfamPF003199.9E-24199246IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-18212227IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-18227248IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MTSLVGLQDS SPQHPNLSER KSSFWKAPEA GKIKMNVDGS FLYPGSSGFS AAIRNDVGVV  60
IVTVFGKPTA SSPIQAXAMA ILNSLEVLSM YEEEDIEVES DYQLLVQALK TGNLDLVLDA  120
NFLCLDIKLL TEDLAISFNH VNRTCNVVAH MLAKKGLEES RKPILLLEFC FSFLHLLVAM  180
KDIEMKKTSM GRKKIEISKI KLKKHLQVTF SKRRGGLFKK ASELCILCGV EIAVIVFSPA  240
GKLFSFGHSS VNSIVDRFLA SQNFDPPLHN VDGNGFPHVN MQQKKYIEIL NQLEAEKRRE  300
EKLAQSRNTG DQDFVHGQCW WNSIAIDDFG LYELEQLKSS LEGLKEKINK RDSELLSWNR  360
KENRGLEKTE MGGQENVKQL EECSVSNALG TWVFSVAGAL LAIPVGIRRK SLAPLVFFGT  420
TGTMLDIIMG ISACEREHAE RQMKLLEAQN LATDASLVET GSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-14190258169Myocyte-specific enhancer factor 2B
1tqe_Q2e-14190258169Myocyte-specific enhancer factor 2B
1tqe_R2e-14190258169Myocyte-specific enhancer factor 2B
1tqe_S2e-14190258169Myocyte-specific enhancer factor 2B
6c9l_A2e-14190258169Myocyte-specific enhancer factor 2B
6c9l_B2e-14190258169Myocyte-specific enhancer factor 2B
6c9l_C2e-14190258169Myocyte-specific enhancer factor 2B
6c9l_D2e-14190258169Myocyte-specific enhancer factor 2B
6c9l_E2e-14190258169Myocyte-specific enhancer factor 2B
6c9l_F2e-14190258169Myocyte-specific enhancer factor 2B
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-31AGAMOUS-like 62