PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018445-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 402aa    MW: 44285.8 Da    PI: 9.3881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018445-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06174196223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp Cg+ Fs  +nL++H+ + H
  NNU_018445-RA 174 SCPECGEIFSKAENLEVHQAVrH 196
                    8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-4172192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619173201IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-26198401No hitNo description
Gene3DG3DSA:3.90.228.104.4E-18199400IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAEPRNPRKP IKKAHQDQNL QPQKPNEKPP PWAVVRNLLT CKYVQPVEQQ AVVANSKRYK  60
KMRCSGSLCN DTRIMQRPDS SLPEDCKKWA SICSSTNTAS SRSMKVPLNE INGVVPTPSS  120
SYSSSSLFSS GSSVGGPFRG MPLRRLSGCY ECRTVVDPIN GVRKAPALRT VVCSCPECGE  180
IFSKAENLEV HQAVRHAVSE LGPEDTSRNI VEIIFQSSWL KKQAAVCKID RILKVHNSQK  240
TITRFEDYRE SIKAKASKLA KKHPRCVADG NELLRFHCTT FVCSIGMNGS SNLCNSIPQC  300
NICNIIRNGF KVPTGDAGAG ICTTATSGKA HDNAQIKSED DKRAMLVCRV IAGRVKRTQD  360
TNPAEEFDSV AGPTGIYSNL DELYVFNPKA ILPCFVVIYR GF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274362.10.0PREDICTED: uncharacterized protein LOC104609687
TrEMBLA0A1U8B1310.0A0A1U8B131_NELNU; uncharacterized protein LOC104609687
STRINGXP_010274362.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-98C2H2-like zinc finger protein