PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018552-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 152aa MW: 17175 Da PI: 10.6739

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018552-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	34.3	4.8e-11	113	142	2	33
--SS-EEEEEEE--TT-SS-EEEEEE-STT-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCp 33 D+y+WrKY qK++kgs++pr Y C +++C NNU_018552-RA 113 ADEYSWRKYAQKPIKGSPHPR--YICLFPTCL 142 7********************..899999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	10.958	107	133	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.5E-9	108	141	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-8	110	142	IPR003657	WRKY domain
SMART	SM00774	0.0017	112	149	IPR003657	WRKY domain
Pfam	PF03106	1.9E-6	114	134	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MKLQADVMFG RSNNSINLKF DNSNCTATMS SNRSFISSLS MDGTVSNLDV KAFHLIRAPQ 60 SSNRNSQQTP KRRCFGRGED GMIGRYSLLS SISVFRKLRV KSIKVPTISN KLADEYSWRK 120 YAQKPIKGSP HPRYICLFPT CLMILMCIIV VD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278127.1	3e-52	PREDICTED: probable WRKY transcription factor 21
Refseq	XP_010278128.1	3e-52	PREDICTED: probable WRKY transcription factor 21
Swissprot	Q93WU6	7e-31	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A3S3MCD2	3e-51	A0A3S3MCD2_9MAGN; Protein WRKY1
STRING	XP_010278127.1	1e-51	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	3e-33	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]