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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_018556-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | bHLH | ||||||||
| Protein Properties | Length: 240aa MW: 27704.3 Da PI: 8.3169 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 33.1 | 9.9e-11 | 78 | 125 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h + Er RRd+ ++ +e L ++lP+ +K++K++i++ A+ Y+++L+
NNU_018556-RA 78 YRHMISERVRRDKQRQNYEALHSILPPG-----TKNEKISIVRAATSYLQDLE 125
568899********************97.....8****************995 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.96E-13 | 67 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 12.83 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.93E-7 | 79 | 123 | No hit | No description |
| Pfam | PF00010 | 6.3E-8 | 79 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 80 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 9.7E-7 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
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| GO Term | GO Category | GO Description | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 240 aa Download sequence Send to blast |
MEDPFRAWET QRATNWPEAP SVNQSAFTRY TTLTQEFRPN NPVSVSNRPN CNKRIIELLR 60 AISNARSKSR ESETDRCYRH MISERVRRDK QRQNYEALHS ILPPGTKNEK ISIVRAATSY 120 LQDLEKLKEE LEKQNHELGV SLAGKADQTQ DSTKKIRLQV CNPSSAIDSM VWVLRWLKSM 180 NLKARKIESK FSVQEFSAVL EIETEIEAAA VENAMQCALM EVERKLAVDF VEREEYSGSH |
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010274176.1 | 1e-179 | PREDICTED: transcription factor bHLH92-like | ||||
| TrEMBL | A0A1U8B493 | 1e-177 | A0A1U8B493_NELNU; transcription factor bHLH92-like | ||||
| STRING | XP_010274176.1 | 1e-178 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G43650.1 | 3e-22 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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