PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018579-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 324aa    MW: 34472.7 Da    PI: 6.4281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018579-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-10171215554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  NNU_018579-RA 171 HSIAERLRRERIAERMKALQELVPSS-----NKTDRAAMLDEIVDYVKFL 215
                    99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-15164225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-11164220No hitNo description
PROSITE profilePS5088816.221166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7171215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MANNPPEGLG DDFFEQILSI PYTGNDSALA GNDGNLAGTA GSMVLQLSSG DGSSHVAGGG  60
FQGTVFPLGL SLDQAKSGFV KPEEASGGDK RFREETDGRA PSGKNDGDSV HLTNLFPAFG  120
HLQTNPVRPA TPQVHQPFHG QPTPATVASV AHPPAIRPRV RARRGQATDP HSIAERLRRE  180
RIAERMKALQ ELVPSSNKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAQLVADI  240
PLTSVEGEGS EGRSSQRAWE KWSNDGTERQ VAKLMEEDVG AAMQFLQSKA LCIMPMSLAA  300
AIYHTHPPEA PTTPIVKPES SAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274208.10.0PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227681e-100UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1U8BD320.0A0A1U8BD32_NELNU; transcription factor UNE12 isoform X1
STRINGXP_010274208.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]