PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018728-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 342aa    MW: 37819.8 Da    PI: 6.414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018728-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10232276655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +++ ++RR++i +++  L++l+P+ a      K++ +++LekA+ Y+k Lq
  NNU_018728-RA 232 SIAAKNRREKISERLKILQDLIPNgA------KVDLVTMLEKAISYVKFLQ 276
                    6788********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-13224285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-13225283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.996226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-11228280No hitNo description
PfamPF000103.3E-7231276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MYGGSPFPFS DSSSLPFFGF INNYHEAGLE EEEGSNNTSG STKDTALSSL PSLSDLSKEN  60
SRAYVFGITN SPPEEAQSII NFRTSYDNSA CPSESFLSFE QGERVPRSSS RRTTDDHEDG  120
YSIWIDSTHL INQCQWHQSS SKSAAATDSR LSAEDLNCYG LKKNTEGRFG WLYSTPIATA  180
ENVDEEYGGS EARFLKRPYT GGEMQAVAKK HWAAGSPWTP KPKSSPPKDS QSIAAKNRRE  240
KISERLKILQ DLIPNGAKVD LVTMLEKAIS YVKFLQLQVK VLATDEFWPV QGGKDPEVGQ  300
VKEAIDAILS SHGLRNSSSK EESHGATTRR NQIIENKKKN KS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274647.10.0PREDICTED: putative transcription factor bHLH086
TrEMBLA0A1U8B5E00.0A0A1U8B5E0_NELNU; putative transcription factor bHLH086
STRINGXP_010274647.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-47RHD SIX-LIKE 1