PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018734-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 186aa    MW: 21338.5 Da    PI: 10.0775
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018734-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596.1e-1993127135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C+ C+t+kTplWR+gp g+k+LCnaCG+++rk+++
  NNU_018734-RA  93 CVDCKTSKTPLWRSGPAGPKSLCNACGIRQRKRRR 127
                    ********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-1887140IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.51987144IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-1389128No hitNo description
Gene3DG3DSA:3.30.50.108.1E-1791130IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.57E-1092120No hitNo description
PfamPF003201.1E-1693127IPR000679Zinc finger, GATA-type
PROSITE patternPS00344093118IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MLSSAERSSS GWDPHHHNHT YCYYDDQPHR DHDDDQQYDH HLQLPVQELK LGLYRKRPRK  60
IPARKDEEGG EMAKVVRGKK HATEGQMVIS RVCVDCKTSK TPLWRSGPAG PKSLCNACGI  120
RQRKRRRREL NILKMAGGVT MEKRQSKVEG KRTTLHMLQR RKFEGKEEAE AALLLMALSC  180
GVCVHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127QRKRRRR
2122126RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274656.11e-137PREDICTED: GATA transcription factor 20-like
TrEMBLA0A1U8BDE01e-136A0A1U8BDE0_NELNU; GATA transcription factor 20-like
STRINGXP_010274656.11e-137(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-17GATA transcription factor 23