PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018779-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WOX
Protein Properties Length: 378aa    MW: 42827.2 Da    PI: 7.7528
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018779-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.58.2e-2279138357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    +R+++t+eql++Leel++  +r+p+ae++++++++l    +++ ++V++WFqN++a+e++
  NNU_018779-RA  79 SRWNPTPEQLRTLEELYRCgTRTPTAEQIQHITAQLrrfgKIEGKNVFYWFQNHKARERQ 138
                    7*****************99**************************************97 PP
2Wus_type_Homeobox115.32.9e-3778140365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
      NNU_018779-RA  78 SSRWNPTPEQLRTLEELYRCGTRTPTAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 140
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.86774139IPR001356Homeobox domain
SMARTSM003892.1E-476143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-879138IPR009057Homeodomain-like
PfamPF000461.6E-1979138IPR001356Homeobox domain
SuperFamilySSF466891.28E-1179141IPR009057Homeodomain-like
CDDcd000865.22E-580134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MWMMGCSDGS GFNMADSFNG RKLRPLMPRL TTNSTNTATV MAPCLTRIHG TDFFALNTHL  60
ATVTEHSKRE FSAQPVVSSR WNPTPEQLRT LEELYRCGTR TPTAEQIQHI TAQLRRFGKI  120
EGKNVFYWFQ NHKARERQKR RRRSAASEEQ QHYDTESLDK KESGSSRTGY EVEQTKNWAP  180
PTNCSSLSEE TVSMQRAAVA ESRTDGWIQF EEGELQHRRT SVERNPTWQM MQLSSPPTTP  240
LKNTITTATT EAITVVDPKL INNQNLELFK TPSREYLPAD LLSNGEERKD QEECGESQTL  300
QLFPLRSDSG NGGVGDEEKE TEVCKGWVWA FSDVGVKKVS IKCISTMMAG IMKSLIKENI  360
TGFCVDRTTL ILPSRLNN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274717.10.0PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBLA0A1U8B2030.0A0A1U8B203_NELNU; WUSCHEL-related homeobox 1-like
STRINGXP_010274717.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-46WUSCHEL related homeobox 1