PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018789-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 284aa MW: 32127.3 Da PI: 8.6597

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018789-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5.3e-16	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W +++ + g++R++k+c++rw++yl NNU_018789-RA 9 KGAWTEEEDMLLRKCIERYGEGKWCKVPLRAGLNRCRKSCRLRWLNYL 56 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.487	1	60	IPR017930	Myb domain
SuperFamily	SSF46689	7.42E-20	6	83	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-21	7	64	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-15	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	9	56	IPR001005	SANT/Myb domain
CDD	cd00167	2.90E-11	11	56	No hit	No description
PROSITE profile	PS50090	4.286	59	88	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.3E-6	65	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDGGLGLRKG AWTEEEDMLL RKCIERYGEG KWCKVPLRAG LNRCRKSCRL RWLNYLRPGI 60 KRGEWSLIAG RLPGRTANGI KNYCKTRLSK NKLAPKKEEK AKYSTVEKFK AIRPQPRTLS 120 KSSRWFRPLA DNSTSEGVTS QSGGEILSKA ASDNSTTVGT NNRSGEMPNE TTPDLPPPTD 180 DLMQWWKSVL DESDHMDTTC PIIRGSERCG PSVQVQPTIE GGNPYQWDNF DKTDEWDDLS 240 FSEKVWDLLA SEMNQISGEQ AINAAINARE DMNKTWKHVE MSPI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274761.1	0.0	PREDICTED: myb-related protein 330-like
TrEMBL	A0A1U8B239	0.0	A0A1U8B239_NELNU; myb-related protein 330-like
STRING	XP_010274761.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	6e-44	myb domain protein 113