PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018802-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 338aa    MW: 38985.3 Da    PI: 9.2146
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018802-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-083379347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     rWT  E +l+ +a  ++  +    +k Ia++++ g+t +q+k ++q++
    NNU_018802-RA 33 RWTWNENKLFENALVEFNLDspdIFKNIASRVP-GKTIEQIKKHYQDL 79
                     9*****************99*************.************87 PP
2Myb_DNA-binding39.91e-12135178447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT+eE++ +v + + +G g+Wk I+r    +Rt+ q+ s+ qky
    NNU_018802-RA 135 WTEEEHQMFVLGLEIYGRGDWKNISRNCVRTRTPSQIASHAQKY 178
                      **************************9999*************9 PP
3GRAS106.63.5e-33244337279373
           GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    ++eri+vE+++l+r+ivn++aceg+er+erhe l+kW++r+++aGF+p+pls+++++ +k llr ++ + y++ e++++++lgWkdr+L+s+SaW
  NNU_018802-RA 244 TKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRFTMAGFRPYPLSSYVNSVIKGLLRCYS-EHYTLVEKDEAMLLGWKDRNLISASAW 337
                    499************************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.9252680IPR017877Myb-like domain
SMARTSM007172.2E-43082IPR001005SANT/Myb domain
CDDcd001670.00143380No hitNo description
PfamPF002491.1E-53379IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-83486IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-45381IPR009057Homeodomain-like
PROSITE profilePS5129414.439123183IPR017930Myb domain
SuperFamilySSF466896.32E-16130183IPR009057Homeodomain-like
SMARTSM007171.2E-8131181IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.2E-15134181IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-9134177IPR009057Homeodomain-like
CDDcd001673.08E-9135179No hitNo description
PfamPF002497.4E-10135178IPR001005SANT/Myb domain
PROSITE profilePS5098511.982244319IPR005202Transcription factor GRAS
PfamPF035141.2E-30244337IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
ESDPVQSSLL DSFLSEFCIS SISSSSQSDQ VTRWTWNENK LFENALVEFN LDSPDIFKNI  60
ASRVPGKTIE QIKKHYQDLI QDIETIYSGH FPLPNYKEIE KDPESKAPNQ AKMDKETSPS  120
AGKPTSNKGK GVKLWTEEEH QMFVLGLEIY GRGDWKNISR NCVRTRTPSQ IASHAQKYFL  180
RLQMPKKRKR RRPSVDKSQA IKYCYKLKAA IEFSKAQKQA YSANSCSFNY DDAKLDPTLE  240
QLITKERINV EQHCLARDIV NIIACEGKER VERHELLGKW KSRFTMAGFR PYPLSSYVNS  300
VIKGLLRCYS EHYTLVEKDE AMLLGWKDRN LISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1434971174RADIALIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179188LRLQMPKKRK
2184190PKKRKRR
3184192PKKRKRRRP
4185190KKRKRR
5185191KKRKRRR
6186191KRKRRR
7187191RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274764.11e-144PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A1U8BDN41e-143A0A1U8BDN4_NELNU; transcription factor DIVARICATA-like
STRINGXP_010274764.11e-144(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-42scarecrow-like 5