PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018804-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 593aa MW: 64180.4 Da PI: 4.8904

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018804-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	431.4	6.9e-132	233	583	1	361
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 lv++L++cAeav++++l+la+al++++ la +++ +m+++a+yf+eALa+r++r l p+++ e++ s++l++ f+e++P+lkf+h+ NNU_018804-RA 233 LVHTLMACAEAVQQDNLKLAEALVKQIGLLAVSQAGAMRKVATYFAEALARRIYR--------LYPQDSLESSFSDVLQM--HFYETCPYLKFAHF 318 689**************************************************........55666665455555444..4********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae+++v+fe++ +va++l+d++ + NNU_018804-RA 319 TANQAILEAFAGKSRVHVIDFSMKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLARLAETIHVEFEYRGFVANSLADIDAS 414 ******************************************************************************************** PP GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikv 285 +L+++p Ea+aVn+v++lhrll++++++e+ vL+ +k+++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsl ++++ +++++++ NNU_018804-RA 415 MLDIRPseVEAVAVNSVFELHRLLARPGAIEK----VLSSIKEMKPKIVTIVEQEANHNGPVFLDRFTEALHYYSTLFDSLeGCGMSPPNSQDQVM 506 **8889******************....*****************************************8889******* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 + ++lg++i+nvvaceg er+erhetl +Wr+rl ++GF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lg NNU_018804-RA 507 SGVYLGQQICNVVACEGVERVERHETLTQWRNRLASSGFAPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLG 583 *************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	1.3E-38	41	114	No hit	No description
Pfam	PF12041	1.1E-36	41	108	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	67.714	207	575	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-129	233	583	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MKREHQESTS GGGGSSGGYS MAAAGKSKMW DELEQQDAGV DELLAVLGYK VRSSEMAEVA 60 QKLEQLDMVL GSAQEDGLSH LASETVHYNP SDLGTWLESM LSELNAPPNF DPTPSQQPSL 120 PQSLDDSLLA PAESSSITTV DFPNSRQQQQ IAQPSPIYDE PTDYDLRAIP GGAIYGHTEP 180 SNKRMKPTST STSASSSSPP AATPAPVGVS NGVSTESARS VVLVDSQETG IRLVHTLMAC 240 AEAVQQDNLK LAEALVKQIG LLAVSQAGAM RKVATYFAEA LARRIYRLYP QDSLESSFSD 300 VLQMHFYETC PYLKFAHFTA NQAILEAFAG KSRVHVIDFS MKQGMQWPAL MQALALRPGG 360 PPAFRLTGIG PPQPDNTDAL QQVGWKLARL AETIHVEFEY RGFVANSLAD IDASMLDIRP 420 SEVEAVAVNS VFELHRLLAR PGAIEKVLSS IKEMKPKIVT IVEQEANHNG PVFLDRFTEA 480 LHYYSTLFDS LEGCGMSPPN SQDQVMSGVY LGQQICNVVA CEGVERVERH ETLTQWRNRL 540 ASSGFAPVHL GSNAFKQASM LLALFAGGDG YRVEENNGCL MLGDGAKGHI KAC

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MKREHQESTS GGGGSSGGYS MAAAGKSKMW DELEQQDAGV DELLAVLGYK VRSSEMAEVA  60
QKLEQLDMVL GSAQEDGLSH LASETVHYNP SDLGTWLESM LSELNAPPNF DPTPSQQPSL  120
PQSLDDSLLA PAESSSITTV DFPNSRQQQQ IAQPSPIYDE PTDYDLRAIP GGAIYGHTEP  180
SNKRMKPTST STSASSSSPP AATPAPVGVS NGVSTESARS VVLVDSQETG IRLVHTLMAC  240
AEAVQQDNLK LAEALVKQIG LLAVSQAGAM RKVATYFAEA LARRIYRLYP QDSLESSFSD  300
VLQMHFYETC PYLKFAHFTA NQAILEAFAG KSRVHVIDFS MKQGMQWPAL MQALALRPGG  360
PPAFRLTGIG PPQPDNTDAL QQVGWKLARL AETIHVEFEY RGFVANSLAD IDASMLDIRP  420
SEVEAVAVNS VFELHRLLAR PGAIEKVLSS IKEMKPKIVT IVEQEANHNG PVFLDRFTEA  480
LHYYSTLFDS LEGCGMSPPN SQDQVMSGVY LGQQICNVVA CEGVERVERH ETLTQWRNRL  540
ASSGFAPVHL GSNAFKQASM LLALFAGGDG YRVEENNGCL MLGDGAKGHI KAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-63	240	583	26	366	Protein SCARECROW
5b3h_A	5e-63	240	583	25	365	Protein SCARECROW
5b3h_D	5e-63	240	583	25	365	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274729.1	0.0	PREDICTED: DELLA protein GAI1-like
Swissprot	Q8S4W7	0.0	GAI1_VITVI; DELLA protein GAI1
TrEMBL	A0A1U8BEC9	0.0	A0A1U8BEC9_NELNU; DELLA protein GAI1-like
STRING	XP_010274729.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	0.0	GRAS family protein