PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018848-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

ERF

Protein Properties

Length: 264aa MW: 29848.1 Da PI: 4.9826

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018848-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56	9.6e-18	122	171	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + + r++lg+f++ae Aa a+++a+ +++g NNU_018848-RA 122 YRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAAFSMRG 171 9*****.******422...25***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.972	121	179	IPR001471	AP2/ERF domain
SMART	SM00380	6.7E-36	121	185	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.0E-30	121	180	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.25E-22	121	181	IPR016177	DNA-binding domain
Pfam	PF00847	4.8E-13	122	171	IPR001471	AP2/ERF domain
CDD	cd00018	4.97E-19	122	180	No hit	No description
PRINTS	PR00367	5.9E-10	122	133	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.9E-10	145	161	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDYIQREVVI KEEPTSNQNP ASYSDMDSPF FQSDSSFFQS SQNSEFSPES SMSSPEYFSW 60 DGFAFSDNSL PFNVNDSEEM LLFDVLAEAA RDPPETQFSA RVKDEEVTSK EKEEPMTKQK 120 TYRGVRRRPW GKFAAEIRDS TRHGIRVWLG TFDSAEAAAL AYDQAAFSMR GSMAVLNFPV 180 EHVRQSLRDM KYGCEDGCSP VVALKKRHSI RRKSVSKKNK GREVRIENVV ELEDLGTDEQ 240 AHQSASAPSG VLTSNLNYFK ATNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-28	122	182	15	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274787.1	1e-177	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	5e-66	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A1U8B259	1e-176	A0A1U8B259_NELNU; ethylene-responsive transcription factor 1B-like
STRING	XP_010274787.1	1e-177	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	7e-56	ethylene response factor 1

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]