PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018860-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 215aa MW: 24376.8 Da PI: 7.8395

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018860-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.3e-10	65	111	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f L ++l + + K +K++i+ A++ +++L NNU_018860-RA 65 KACREKMRRDRMNDRFLDLSSVLEPG---RPAKTDKSAIVSDAIRVLNQL 111 678********************8...89**************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.119	60	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.61E-8	64	116	No hit	No description
SuperFamily	SSF47459	7.33E-12	65	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.6E-8	65	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	66	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-10	67	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00890	0.00284	105	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDSLKDSSWN LLDYDMIEDG TSSDFYWNNQ ICCLDFQSPT GSVPQEKACA RKRGRNQSCS 60 DPGSKACREK MRRDRMNDRF LDLSSVLEPG RPAKTDKSAI VSDAIRVLNQ LRTEAQELKD 120 ASEKLREVIK NLKAEKNELR EEKLQLKADK EKMEQQVKAM SLLPAGFVPP LPATYHTGAN 180 KLMAYPSYGG FPMWQWIPPV VLDTSQDHVL RPPVA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00102	PBM	Transfer from AT4G14410	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274798.1	1e-160	PREDICTED: transcription factor bHLH104-like
Swissprot	Q8L467	6e-67	BH104_ARATH; Transcription factor bHLH104
TrEMBL	A0A1U8BDR4	1e-159	A0A1U8BDR4_NELNU; transcription factor bHLH104-like
STRING	XP_010274798.1	1e-160	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14410.2	2e-69	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Wang C,Yao X,Yu D,Liang G Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana. Planta, 2017. 246(3): p. 421-431 [PMID:28451750] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Min JH, et al. A basic helix-loop-helix 104 (bHLH104) protein functions as a transcriptional repressor for glucose and abscisic acid signaling in Arabidopsis. Plant Physiol. Biochem., 2019. 136: p. 34-42 [PMID:30639920]