PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018963-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HB-other

Protein Properties

Length: 528aa MW: 59607.1 Da PI: 8.182

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018963-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.5	1.1e-13	18	68	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ qle Le+++ +++yp+++ +e+ A+ l+Lt +qV+ WF rR k+k+ NNU_018963-RA 18 KTQFQLESLENFYSEEQYPTQAVMEDYATALNLTYKQVRGWFVERRRKDKR 68 5899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.99E-13	6	70	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-14	8	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	9	69	IPR001356	Homeobox domain
SMART	SM00389	4.0E-12	11	73	IPR001356	Homeobox domain
CDD	cd00086	8.79E-12	17	70	No hit	No description
Pfam	PF00046	5.9E-11	18	68	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MGNDDVAKMK QKHGSKRKTQ FQLESLENFY SEEQYPTQAV MEDYATALNL TYKQVRGWFV 60 ERRRKDKREN EESGEASTVK VRSSMVFRKD GPPLGSEFDA LPAGAFHHCK AWLETLRVTS 120 GMKEATKGCG LQGLGFNRVE VEDDLQILIG WRKDISKSSN PDSQICKSAP VKKHGIGKGL 180 MTVWRATNPD AKGLPAGVNF TGIETGNIQP SLASSKSKKQ GREKRLQHQR LLETECNKDG 240 HPKRLHNVEC KLALEGLRSL EQPNELAVQV DDEELELREL QAGPNPLTCC DHLATNGIHG 300 CSLCKGLVLL SCILKERVIP SLKMEMGLSI TDKSYFILID LLARSFISCT LILWQLNCAP 360 LLLMSLLKHF MTRLVNRIFE LGLLDLPETE SHLVHMVHFI KDSLLLGKIH VSLLKLLLSD 420 VAIELSNGYL PRMSKDCRFL WFLHSVENQE FLVKFWNESL NPLTWTEVLR QILVAAGFGL 480 KQSTLRKEAL NKGLGLGWPR AELLMSYSSL AHEQLCLAWF KPCFEPDI

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MGNDDVAKMK QKHGSKRKTQ FQLESLENFY SEEQYPTQAV MEDYATALNL TYKQVRGWFV  60
ERRRKDKREN EESGEASTVK VRSSMVFRKD GPPLGSEFDA LPAGAFHHCK AWLETLRVTS  120
GMKEATKGCG LQGLGFNRVE VEDDLQILIG WRKDISKSSN PDSQICKSAP VKKHGIGKGL  180
MTVWRATNPD AKGLPAGVNF TGIETGNIQP SLASSKSKKQ GREKRLQHQR LLETECNKDG  240
HPKRLHNVEC KLALEGLRSL EQPNELAVQV DDEELELREL QAGPNPLTCC DHLATNGIHG  300
CSLCKGLVLL SCILKERVIP SLKMEMGLSI TDKSYFILID LLARSFISCT LILWQLNCAP  360
LLLMSLLKHF MTRLVNRIFE LGLLDLPETE SHLVHMVHFI KDSLLLGKIH VSLLKLLLSD  420
VAIELSNGYL PRMSKDCRFL WFLHSVENQE FLVKFWNESL NPLTWTEVLR QILVAAGFGL  480
KQSTLRKEAL NKGLGLGWPR AELLMSYSSL AHEQLCLAWF KPCFEPDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	66	RRRKDK
2	61	68	RRRKDKRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274901.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A1U8BDZ0	0.0	A0A1U8BDZ0_NELNU; homeobox-DDT domain protein RLT3 isoform X2
STRING	XP_010274899.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	2e-61	Homeodomain-like transcriptional regulator