PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019133-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 240aa MW: 26584.7 Da PI: 5.3168

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019133-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H NNU_019133-RA 69 YTCTFCRREFRSAQALGGHMNVH 91 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-6	66	95	No hit	No description
PROSITE profile	PS50157	11.157	69	96	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.8E-5	69	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0066	69	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MAAELGLLSL TQLQKLAQAQ QQPNPSFTAS PWMWNAKQQA QDDDDSWEVR AFAEDTGSIM 60 GTTWPPRSYT CTFCRREFRS AQALGGHMNV HRRDRARLRQ SPTAGSSDPS SSSNSSSTLI 120 IPTREFVPNG AYCLLYPLPS PTNAFTPTSS VNGCMDSPSN LLSVSPYLTN NWVSSCPPSM 180 NFPVAADIQV QASVCRSGRF GPPFYMRNEK EDDNNRNYDK ELVAEEVDLE LRLGQKPPPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	3e-13	64	91	2	29	superman protein
2l1o_A	3e-13	64	91	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275242.1	1e-179	PREDICTED: uncharacterized protein LOC104610368
TrEMBL	A0A1U8BFK0	1e-178	A0A1U8BFK0_NELNU; uncharacterized protein LOC104610368
STRING	XP_010275242.1	1e-178	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	5e-39	C2H2 family protein