PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019145-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LSD
Protein Properties Length: 205aa    MW: 22279 Da    PI: 8.3559
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019145-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.45.5e-1487111125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    C+gCr+lL+YP GA+sV+Ca+C++V
  NNU_019145-RA  87 CSGCRNLLAYPVGATSVCCAVCNAV 111
                    ************************9 PP
2zf-LSD145.89.8e-15127151125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    CggC+tlL+Y rGA+sV+C++C+t+
  NNU_019145-RA 127 CGGCHTLLMYIRGATSVQCSCCHTI 151
                    ***********************97 PP
3zf-LSD141.22.8e-13165189125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+Cr lL+Y +GA+sV+Ca+C++V
  NNU_019145-RA 165 CGNCRMLLMYQYGARSVKCAVCNFV 189
                    ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.9E-483186No hitNo description
TIGRFAMsTIGR010538.7E-1384114IPR005735Zinc finger, LSD1-type
SuperFamilySSF486957.95E-585186IPR011031Multihaem cytochrome
PfamPF069431.7E-1087111IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.8E-14124153IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-12127151IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.3E-12162191IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-12165189IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
RRDDGNGRQN YVLLCLRLQV FRSLEEEGLS CQIKQCRFLS PRILRLQYNL CQQTVAIRGS  60
GGAKYVDINL IYANPWSVPG AQSQLVCSGC RNLLAYPVGA TSVCCAVCNA VTAVPPPVGT  120
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT INLAMEANQV AHVNCGNCRM LLMYQYGARS  180
VKCAVCNFVT SIGALPITAE QKFNN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275257.19e-86PREDICTED: protein LSD1-like
RefseqXP_010275258.19e-86PREDICTED: protein LSD1-like
RefseqXP_010275259.19e-86PREDICTED: protein LSD1-like
RefseqXP_010275260.19e-86PREDICTED: protein LSD1-like
SwissprotQ93ZB12e-74LOL1_ARATH; Protein LOL1
TrEMBLA0A1U8B6W72e-84A0A1U8B6W7_NELNU; protein LSD1-like
STRINGXP_010275257.13e-85(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]