PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019180-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 565aa    MW: 63001.1 Da    PI: 6.3476
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019180-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.5e-28316370156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH+rFv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  NNU_019180-RA 316 KMKVDWTPELHKRFVQAVEQL-GINQAIPSRILELMKVEGLTRHNVASHLQKYRMH 370
                    5689*****************.********************************96 PP
2Response_reg29.83e-11201261109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                    vl+ d++ + ++ +++ le+ +y +v ++ + +eal+ + +k   +++ ++ ++  +  d +++l+   +++ +lp ++ ++ +  +++ +++ +G
  NNU_019180-RA  20 VLLLDEDSVSADEIKSKLEEMDY-IVSTFCKESEALTAIANKPdsFHVAIVEVSVAKsHDSFRFLE---TAK-DLPTVMTSSVNCLNTMMKCIALG 110
                    7999*******************.***************888888******999988556666555...444.799999999999*********** PP

                    ESEEEESS--HHHHHH CS
   Response_reg  94 akdflsKpfdpeelvk 109
                    a +fl Kp ++++l++
  NNU_019180-RA 111 AAEFLQKPLSEDKLRN 126
                    *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-1416135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-1516169No hitNo description
SMARTSM004480.006118128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.92319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.8E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.65E-621131No hitNo description
PROSITE profilePS5129415.355313372IPR017930Myb domain
SuperFamilySSF466891.7E-18314373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27314373IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25316370IPR006447Myb domain, plants
PfamPF002498.2E-8319368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MVCTADDLLG WKDFPKGLRV LLLDEDSVSA DEIKSKLEEM DYIVSTFCKE SEALTAIANK  60
PDSFHVAIVE VSVAKSHDSF RFLETAKDLP TVMTSSVNCL NTMMKCIALG AAEFLQKPLS  120
EDKLRNIWQH VVHRAFNAGG SGISKSLKPV RETVVSMLQL QVETSKSEKE ILLEKENEVQ  180
DLKHDNEQTE ARDRFSAPST PQLKQGGRLL GDGYCQDNSS SLLEKVIGDQ EGESKSVDTT  240
CNNSVAEITL KVNQSPKPEE GGFEEDDSTD DSKTGSNISS HPRDKSSVAD SSINTDNPNK  300
ASLLPNSCGN KASKKKMKVD WTPELHKRFV QAVEQLGINQ AIPSRILELM KVEGLTRHNV  360
ASHLQKYRMH RRHIAPKEDD WRWQHPRDTV QRVYPHKPVM AFPPYHSNHG FSASQYYPVW  420
GHPGTNPPNV PMWGHPSYNM WQSPEGWPCK NYPGMQADAW GCPVMPTPQG PCATFPQVSM  480
ADMEDASRFH SSFEGIGDRS SLPRNFIDLH PAEEVIDKVV KEAISKPWLP LPLGLKPPST  540
DIVISELHRQ GISTIPPYKN ANNSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-18321370655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275321.10.0PREDICTED: two-component response regulator-like APRR2 isoform X3
SwissprotQ6LA431e-140APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U8B7110.0A0A1U8B711_NELNU; two-component response regulator-like APRR2 isoform X3
STRINGXP_010275314.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-142ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]