PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019208-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34223.3 Da    PI: 7.374
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019208-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-18133187256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++k+q  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  NNU_019208-RA 133 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 187
                    788899***********************************************98 PP
2HD-ZIP_I/II127.94.2e-41133222191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  NNU_019208-RA 133 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 222
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.3E-352107IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.0E-17109190IPR009057Homeodomain-like
SuperFamilySSF466891.8E-18124190IPR009057Homeodomain-like
PROSITE profilePS5007117.329129189IPR001356Homeobox domain
SMARTSM003893.9E-16131193IPR001356Homeobox domain
PfamPF000467.1E-16133187IPR001356Homeobox domain
CDDcd000861.62E-15133190No hitNo description
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
SMARTSM003402.6E-27189232IPR003106Leucine zipper, homeobox-associated
PfamPF021832.4E-11189223IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMVEKEDLGL SLSLSTADNR HSLQLNLMPS SISSSAASPF MDQKNTWNEA FASSDRNSDL  60
FKGETRSFLR GIDVNRMPST ADCEEEAGAS SPNSTISTVS GKRSERDTNG EEHEIERACS  120
RGISDEEEGD TSRKKLRLSK DQSAVLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ  180
NRRARTKLKQ TEVDCEFLKR CCENLTEENR RLQKEVQELR ALKLSPQFYM HMTPPTTLTM  240
CPSCERVAVS SSSSTASTVT ATPAVDAHHH HPPMAAGPHH HRPIPINPWA AAPIHHRPFD  300
AAAPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137SRKKLRL
2181189RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275386.10.0PREDICTED: homeobox-leucine zipper protein HAT4
SwissprotP466011e-112HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A1U8B3M30.0A0A1U8B3M3_NELNU; homeobox-leucine zipper protein HAT4
STRINGXP_010275386.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.14e-93homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]