PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019231-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 337aa    MW: 37547.1 Da    PI: 6.3797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019231-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20180230255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ k++g
  NNU_019231-RA 180 HYRGVRQRP-WGKFAAEIRDP---NrRGSRVWLGTFDTAVEAARAYDRAAFKMRG 230
                    8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.18E-32179238No hitNo description
Gene3DG3DSA:3.30.730.101.1E-32179239IPR001471AP2/ERF domain
PROSITE profilePS5103224.105180238IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-23180239IPR016177DNA-binding domain
PfamPF008471.9E-14180230IPR001471AP2/ERF domain
SMARTSM003801.3E-37180244IPR001471AP2/ERF domain
PRINTSPR003679.4E-11181192IPR001471AP2/ERF domain
PRINTSPR003679.4E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MATPDEASAL DLIREHLFGD FASLESFLCD FNPRSSGLAT SGEKPSVVVS TSDSFYSHTA  60
SSDSPVSGFS NEAFTSSFHS SMSEPLVSEP ELEISDYLKM NGNDQVDQFF QFEAKPQIID  120
LTTPKSLSSD SNSSFNQRRP SLKIDLPPVK KLEWSGFNQP AQPVVTVSNQ KQTDSEERKH  180
YRGVRQRPWG KFAAEIRDPN RRGSRVWLGT FDTAVEAARA YDRAAFKMRG CKAILNFPLE  240
AGKAVDPPTT NISRKRRRET ETEVTQVKEQ IQMKPIKRER SPEPENTKAA VSTICPLTPS  300
SWTSVWESTD VNGIFNVPLL SPLSPHPPLG YPQLMVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-30179239161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253257RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275423.10.0PREDICTED: ethylene-responsive transcription factor ERF105-like
TrEMBLA0A1U8BFY10.0A0A1U8BFY1_NELNU; ethylene-responsive transcription factor ERF105-like
STRINGXP_010275423.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-35ERF family protein