PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019240-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 236aa    MW: 27459.6 Da    PI: 7.3911
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019240-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.7e-0883102626
                    -SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                    C+ f+  G+C+ Gd+C FaHg
  NNU_019240-RA  83 CPEFRS-GECPKGDSCEFAHG 102
                    666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-774105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-576107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.06177104IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-777103IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-681102IPR000571Zinc finger, CCCH-type
SMARTSM003564.1112135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MLKGVNPSFI EYSRPGPKTI KPGNFSGCDD EMYDSDEFRM YAFKIKRCTR NRSHDWTECP  60
YAHRGEKARR RDPRKINYAA VVCPEFRSGE CPKGDSCEFA HGVFEFWLHP AKYRTRACNA  120
GKYCRRKVCF FAHSPEQLRS ETKYKCYYTY GAPMDRSNFG EGITGASADD REIDITSYNP  180
PVSSKNEIPS EDNWHFSQSF QKLKIYDHGD DEGRERNFGW DVSDLPDIDW ISELVK
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275497.11e-178PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650363e-73C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A1U8BFD31e-177A0A1U8BFD3_NELNU; zinc finger CCCH domain-containing protein 54
STRINGXP_010275497.11e-177(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-75C3H family protein