PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019274-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 341aa MW: 38575.7 Da PI: 4.5142

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019274-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	175	218	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L NNU_019274-RA 175 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 218 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.453	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-15	172	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-12	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	175	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.66E-5	176	223	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-15	176	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.14E-4	267	308	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEVNEHGFLE ELLAFRRETW ETFPATGGMS ELFTNGWSFD CFDENPGLVV GPNSSFGGLA 60 AAVSTSAVPG FNGPFNETYC PYADGLWVPE MEDSSSYKKQ HDTPSFPSQE DYPSSLMEDE 120 EHGLLGDELR NLEERPTTCK MEPVQAPEIP VFNMGMCLER KNRSKKVEGQ PSKNLMAERR 180 RRKRLNDRLS MLRSVVPKIS KMDRTSILGD TIDYMKELLE RIKNLQDEID VDSDQLNLMS 240 IFKELKPNEI LVRNSPKFDV ERRNMDTRIE ICCAGKPGLL LSTVTTLEAL GLEIQQCVIS 300 CFNDFAMQAS CSEEMEQRTV ISSEDIKQAL FRNAGYGGRC L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	184	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275502.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-83	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1U8B3W7	0.0	A0A1U8B3W7_NELNU; transcription factor bHLH93-like
STRING	XP_010275502.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-85	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]