PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019293-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 1204aa    MW: 132823 Da    PI: 6.31
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019293-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-094795161954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +e+  LA+++gLt +qV++WF N R +
  NNU_019293-RA 479 FEHflHPYPKDAEKIMLARQTGLTRSQVSNWFINARVR 516
                    664459******************************88 PP
2Homeobox26.89e-09112811651954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox   19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54  
                     Fe   ++yp+++e+  LA+++gLt++q+++WF N R +
  NNU_019293-RA 1128 FEHflHPYPNESEKLILASQTGLTKNQISNWFINARVR 1165
                     554459******************************88 PP
3BELL126.41.1e-40345416172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erq+lq+k +kLl +l+eVd+rYkqy++q+q+v+ssF+++ag g+akpYt+lAl++iSrhFrcL+dai++qi
  NNU_019293-RA 345 ERQDLQNKMTKLLAMLDEVDRRYKQYHHQMQIVVSSFDVIAGSGAAKPYTALALQTISRHFRCLRDAISGQI 416
                    799********************************************************************8 PP
4BELL113.21.4e-369901061172
           BELL    1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72  
                     e+qelq++++kL  ll+eVd rY+qy++q+++v+ssFe++aglg+ak+Yt+lAl+a+SrhFr+L+daia qi
  NNU_019293-RA  990 EKQELQIRIVKLTALLDEVDSRYEQYYHQMEQVVSSFEVIAGLGAAKSYTALALQAMSRHFRSLRDAIAVQI 1061
                     689******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.9E-60263414IPR006563POX domain
PfamPF075261.5E-50269413IPR006563POX domain
PROSITE profilePS5007112.276457520IPR001356Homeobox domain
CDDcd000866.81E-13460521No hitNo description
SMARTSM003892.3E-10460524IPR001356Homeobox domain
SuperFamilySSF466891.5E-17461527IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-29463526IPR009057Homeodomain-like
PfamPF059207.7E-18477516IPR008422Homeobox KN domain
SMARTSM005743.4E-459221059IPR006563POX domain
PfamPF075262.0E-429271058IPR006563POX domain
PROSITE profilePS5007111.93611061169IPR001356Homeobox domain
CDDcd000861.07E-1011091170No hitNo description
SMARTSM003894.1E-911091173IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-2611141175IPR009057Homeodomain-like
SuperFamilySSF466899.84E-1711141176IPR009057Homeodomain-like
PfamPF059203.0E-1611261165IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1204 aa     Download sequence    Send to blast
MATYFPSSSN QREVMPTLYS VPTSFPDAPV LPGNMMCLNY ASSARSYTDA LAGNSQPQQN  60
CVELSSVGTS ESTLLQQGIL SNFLGSHFGE QNCGLWRDGR NEMSIVQPSG GPTNVQPLGE  120
QLNSGADDLV RSSVGEDSQM GLGTQLGILQ GGQNLKGQGL SLSLGSQIPC ANPMPSFQYR  180
HPNQGLCSFL SSHQSISGDG GRGASSCRDE ESSQSKQSRN AEYLQPDFLG GNHDAMKREG  240
LNNFQCSMGP KLIHSDPYPY GMSGLPSTIP NSKYLKAAQQ LLDEVVNVRS VLKQSDSNKQ  300
QNLGLKGSKD TYEEQKGGTS LPSTDGMPSN PQESSTNSAE ISPAERQDLQ NKMTKLLAML  360
DEVDRRYKQY HHQMQIVVSS FDVIAGSGAA KPYTALALQT ISRHFRCLRD AISGQIHAIR  420
TSLGEQDSKG VGISRLRYVD QQLRQQRALQ QFGMMQQHAW RPQRGLPESS VSILRAWLFE  480
HFLHPYPKDA EKIMLARQTG LTRSQVSNWF INARVRLWKP MVEEMYKEEI GNTEMDSNSS  540
SENASKAVKD DNKVSEDRGE DLQQSVKSTS TEDCHTGQIQ DSKSDVFPDI EMSGSAAGAG  600
LQDGACERDG TDHGVMKLGG EPRSSIDDCS SLFQDTLVQS DRNGGGRFMA AAAAYQMAEL  660
GRFGSGSGVS LTLGLQHCDG GLRMSGRICR DLSLEYQLIS HRGRERDNVP CVFVYVRCLG  720
TISSHGVSSK PVAMVSQDSS SDPASSILHQ FIISSDPISS RTNMEDNGYT SFQSDGRNRN  780
SFPQSLGVLP TTQLLGERIS RAIDQLQAHT ISEDSEPCSR RHLMNLLGAA RETDSDHQAQ  840
RLCLTLGSHL PSHMLIPSLQ YRQRPLHSDP IGFNYLISGE ESREIHSPGL DHTRNDYPFA  900
DSIYTSSSTV QNQACSTSYE IESFANVVAN SRYLKPAQSL LEEVVSVGGK DIDFSSEKPF  960
KRLARNGRRG TLGVSPEMQA EVCSNALAAE KQELQIRIVK LTALLDEVDS RYEQYYHQME  1020
QVVSSFEVIA GLGAAKSYTA LALQAMSRHF RSLRDAIAVQ INVAKSQASQ DIPRIRNSLS  1080
QLSLFDQEGR HNRASLQQLG MMQNRRQPWR PIRGLPENSV AILRSWLFEH FLHPYPNESE  1140
KLILASQTGL TKNQISNWFI NARVRLWKPM IEEMYKEEFA ENSEDPDPSS ENVSVAGKEV  1200
PDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-164661172158Homeobox protein Meis1
4xrs_B2e-164661172158Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4368718e-87AM436871.1 Vitis vinifera contig VV78X150337.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275538.10.0PREDICTED: BEL1-like homeodomain protein 6
RefseqXP_010275539.10.0PREDICTED: BEL1-like homeodomain protein 6
RefseqXP_010275540.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A1U8B7I60.0A0A1U8B7I6_NELNU; BEL1-like homeodomain protein 6
STRINGXP_010275538.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-112BEL1-like homeodomain 7