PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019350-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 725aa    MW: 78893.2 Da    PI: 5.9852
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019350-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.6e-28211264155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  NNU_019350-RA 211 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVERLTRENVASHLQKYRL 264
                    79*******************.********************************8 PP
2Response_reg77.83.8e-26251331109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl vdD+p+ ++ll ++l++ +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ + + + +  Ga
  NNU_019350-RA  25 VLAVDDDPTCLRLLDTLLRRCQY-NVTTTSQAITALKLLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSNTNVVMKGITHGA 118
                    799********************.***************888888*******************87754.558*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+  eel +
  NNU_019350-RA 119 CDYLLKPVRLEELKN 133
                    ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1711725IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.3E-4122146No hitNo description
SuperFamilySSF521726.83E-3522146IPR011006CheY-like superfamily
SMARTSM004481.3E-3123135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.34624139IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-2425133IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.89E-2326138No hitNo description
PROSITE profilePS5129412.23208267IPR017930Myb domain
SuperFamilySSF466891.76E-19208268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-30209269IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-25211264IPR006447Myb domain, plants
PfamPF002493.1E-6213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MTVEERLGTL GDDEPRDQFP VGMRVLAVDD DPTCLRLLDT LLRRCQYNVT TTSQAITALK  60
LLRENKNKFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANSNTNVV MKGITHGACD  120
YLLKPVRLEE LKNIWQHVVR RKKFDSKGQS NYNNQEKSHN GAGEGGQGPN ATGNTDRNGK  180
LNRKRKDQNE DEDEETEENG HENEDPSTQK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKR  240
ILDLMNVERL TRENVASHLQ KYRLYLKRIS CVASQQANMV AALAVKDPSY LRMGSLDGLG  300
DFHALTGSAQ LPSASLMLFP SGGMLNRLNT PAGLGLRGLA SSGMIQLGRS QNISNSINDL  360
GKFQQVTLSG NQSANLLHGM PTSLDLDQLQ QSKGTSRIGE FGSVSDPKIF PVGNGFSDTG  420
VTIGSSSSSF LSVQTNPLVL QGHQQQTQNR GLANQSSIQV APLNADPFDV GTSVSSHLVD  480
PGRCNDNWQS AAPLTGFSAS PLPSSNPFNH GDLSASNLRD NISSTSSHVG NNPLDISATS  540
VVPTPLQDSR RNVQCQSSGP SGNCAQHDNT KFSNFGGFNN SISESMTYAP KQRWEDHKQD  600
YTDRSNLMFS SLNSSLPSHG VVNPLNQSLG QNSAVCSTDM DVILVGQSNT AAPFLMQNND  660
VGKSAMDATM KLNSLEQSRS QDGFVSNNCG SLEDLMSAMI KRERDEVTLM DGDIGYDVYP  720
LGTCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-26207270164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275724.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLA0A1U8B4C70.0A0A1U8B4C7_NELNU; two-component response regulator ORR24-like
STRINGXP_010275724.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-119response regulator 12