PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019375-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 441aa    MW: 50047.2 Da    PI: 6.077
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019375-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.13.7e-45311662128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                    ppGfrF P+deelvv+yL+k + ++kl+  + ik v +y++ P+ L             k + ++kewyfF++rd+ky++g+r+nr++ +gyWkat
  NNU_019375-RA  31 PPGFRFIPSDEELVVFYLQKMLLKEKLPK-NKIKVVSLYDYSPQALTGlllfdmsgdkhKPYVRQKEWYFFTHRDRKYRNGSRPNRSAGDGYWKAT 125
                    9*************************999.77**************85588988887664445889****************************** PP

            NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    g dk+++s +g +vg +k Lvfykg+ pkgekt+W+mheyr+
  NNU_019375-RA 126 GADKSIYS-DGVHVGYRKALVFYKGKPPKGEKTNWIMHEYRV 166
                    ********.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5225194IPR003441NAC domain
PROSITE profilePS5100550.79830194IPR003441NAC domain
PfamPF023658.5E-2431166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEDVSSRSPT SAKSPRKTSD SIWDVDFSDI PPGFRFIPSD EELVVFYLQK MLLKEKLPKN  60
KIKVVSLYDY SPQALTGLLL FDMSGDKHKP YVRQKEWYFF THRDRKYRNG SRPNRSAGDG  120
YWKATGADKS IYSDGVHVGY RKALVFYKGK PPKGEKTNWI MHEYRVAEDI NLRSKEKRDD  180
MRLDDVVLCR IYKKPEKSAT TRVAGDPAKA KVDGEAREIG NNDCDLDILY TQSSFYGEYI  240
NMEYPEQNFY TNEGIQDQLL QHSNLEYRQN FPNNDQRLTN MGLLHGSAEL DLDYWNSNSN  300
LHTNGADSPW KSVQGSCNGL FRQLSDFMHD TLSPCIAKAS VVPPELKTDQ GDDSTVVPPE  360
PPLRRRRIDA SPSPLNYNFV DVPPLPLQPF NQNFVGDPLV ELLNENHVGV PPLPPVLQPS  420
QVDAPPLPPP NQNNGGVPPE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-473019417165NO APICAL MERISTEM PROTEIN
1ut4_B1e-473019417165NO APICAL MERISTEM PROTEIN
1ut7_A1e-473019417165NO APICAL MERISTEM PROTEIN
1ut7_B1e-473019417165NO APICAL MERISTEM PROTEIN
3swm_A1e-473019420168NAC domain-containing protein 19
3swm_B1e-473019420168NAC domain-containing protein 19
3swm_C1e-473019420168NAC domain-containing protein 19
3swm_D1e-473019420168NAC domain-containing protein 19
3swp_A1e-473019420168NAC domain-containing protein 19
3swp_B1e-473019420168NAC domain-containing protein 19
3swp_C1e-473019420168NAC domain-containing protein 19
3swp_D1e-473019420168NAC domain-containing protein 19
4dul_A1e-473019417165NAC domain-containing protein 19
4dul_B1e-473019417165NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275850.10.0PREDICTED: NAC domain-containing protein 26-like
TrEMBLA0A1U8BG550.0A0A1U8BG55_NELNU; NAC domain-containing protein 26-like
STRINGXP_010275845.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-55NAC family protein