PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019385-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 310aa    MW: 35930.3 Da    PI: 9.9806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019385-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.2e-1817107199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+kvl    v  ++ l++p  f+++ +  +e+s  ++le +sg  W++kl  ++  ++++l+ GW+ F  ++ L +gD +vF+++g+  f  +v++
  NNU_019385-RA  17 FLKVL--QKVDLKRPLMIPPAFLKHLE--EESSEVVILEGPSGGLWNIKL--NRIYDGMYLEHGWETFLTDHSLSAGDLLVFSYKGHLHF--TVTI 104
                    67777..55555566********5555..568889***************..9999999*************************997666..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  NNU_019385-RA 105 FDR 107
                    997 PP
2B356.84.1e-18218307297
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    + +l +++v++   + +p  f +++  k  ++++++l+d + +sW v++  rk  +r +l +GW +F+++n+Lk gD +vF+l+g  e +l+v +f
  NNU_019385-RA 218 VIELQTHNVNRPFYVNVPSWFSRSYLPK--KETKIVLQDAKENSWIVNH--RKFTSRDTLYGGWAKFCQENNLKKGDYCVFELVG--ELQLRVYIF 307
                    55666777777888999999*9999534..4568***************..8888888899*********************998..555677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2015110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.88815108IPR003340B3 DNA binding domain
SMARTSM010194.3E-1417108IPR003340B3 DNA binding domain
CDDcd100177.74E-1817106No hitNo description
SuperFamilySSF1019368.83E-2117110IPR015300DNA-binding pseudobarrel domain
PfamPF023626.1E-1517107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-24209307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-24210308IPR015300DNA-binding pseudobarrel domain
CDDcd100179.98E-20215308No hitNo description
SMARTSM010191.4E-15217310IPR003340B3 DNA binding domain
PROSITE profilePS5086314.551217310IPR003340B3 DNA binding domain
PfamPF023622.6E-16217307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKKISCNCSD MKVKAEFLKV LQKVDLKRPL MIPPAFLKHL EEESSEVVIL EGPSGGLWNI  60
KLNRIYDGMY LEHGWETFLT DHSLSAGDLL VFSYKGHLHF TVTIFDRRAC WREDSFTVKP  120
SQESSNTHEV KRRGRPPETL ERAKHGENRK ALIDINPPSQ PSETHQTRGL PKQKQPDQLP  180
SSKGKRVRVS KPIEVNQIAR RPAKEAVAEF TSRLPFFVIE LQTHNVNRPF YVNVPSWFSR  240
SYLPKKETKI VLQDAKENSW IVNHRKFTSR DTLYGGWAKF CQENNLKKGD YCVFELVGEL  300
QLRVYIFPVH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275849.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A1U8B4T10.0A0A1U8B4T1_NELNU; B3 domain-containing protein Os01g0723500-like
STRINGXP_010275849.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-19B3 family protein