PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019548-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 330aa MW: 36648.1 Da PI: 6.7456

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019548-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.8	1.5e-102	3	330	47	374
GRAS 47 eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp..eg 138 AL++r++ + +p + e s+e+++a+++++evsP++k+++++aN aIlea++ + + vH++Dfdi+qG Q+++L +aLa+++ ++ NNU_019548-RA 3 SALRSRVNP-----S--ENPPPVMELCSEEHMMAMQMLYEVSPCFKLGFMAANLAILEATKDQpnNNVHVVDFDIGQGSQYISLVHALAEQQqaGK 91 566666665.....1..122222223499*******************************9999*******************8877566 PP GRAS 139 ppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231 p ++iT+v +p+++ +++ l+ +g+rL+k+Ae++g+ ++fnv+ k+++dl+ e+L ++++EalaVn++++l+r++desvs+e++rd++L+lv NNU_019548-RA 92 PSGVKITAVTEPSNNsnsEADGLRVIGDRLKKLAERVGIGLKFNVVSRKKISDLSRETLGCEEDEALAVNFAFRLYRMPDESVSTENPRDQLLRLV 187 669*****999999999********************9999******************************************* PP GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 k+l P+vv+vveqe++ n+++F+ r+ ea+ yy alf+sl+a++pr++ +r+kvE+ lgr++ n vaceg er er+e ++kWr+r+++aGF+p+ NNU_019548-RA 188 KELGPRVVTVVEQEMNANTAPFVGRVGEACVYYGALFESLDATMPRDAMKRVKVEEC-LGRKAANTVACEGWERMERCEVFGKWRARMRMAGFEPA 282 ***************************************************98.********************************96 PP GRAS 328 plsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++++a+++++ l+ v+ + ++++ee+g +++gW++r L+++SaWr NNU_019548-RA 283 -LGQQVAESMRSRLSSVNrsNPCFTIKEENGGICFGWMGRVLTVASAWR 330 .8999999999999999963445***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.816	1	309	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-100	3	330	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MVSALRSRVN PSENPPPVME LCSEEHMMAM QMLYEVSPCF KLGFMAANLA ILEATKDQPN 60 NNVHVVDFDI GQGSQYISLV HALAEQQQAG KPSGVKITAV TEPSNNSNSE ADGLRVIGDR 120 LKKLAERVGI GLKFNVVSRK KISDLSRETL GCEEDEALAV NFAFRLYRMP DESVSTENPR 180 DQLLRLVKEL GPRVVTVVEQ EMNANTAPFV GRVGEACVYY GALFESLDAT MPRDAMKRVK 240 VEECLGRKAA NTVACEGWER MERCEVFGKW RARMRMAGFE PALGQQVAES MRSRLSSVNR 300 SNPCFTIKEE NGGICFGWMG RVLTVASAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-43	1	330	47	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275686.1	0.0	PREDICTED: scarecrow-like protein 8
Swissprot	Q9FYR7	1e-127	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A1U8BGI8	0.0	A0A1U8BGI8_NELNU; scarecrow-like protein 8
STRING	XP_010275686.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-129	SCARECROW-like 8