PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019556-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 685aa    MW: 77092.6 Da    PI: 7.0663
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019556-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.88.7e-094294661954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  NNU_019556-RA 429 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 466
                    554458******************************88 PP
2BELL116.71.2e-37293361472
           BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    elqk+kakLls+leeVd+rY+qy++q+++v+ssFeavag g+ak+Y +lA+ka+S+hFr+L+dai++qi
  NNU_019556-RA 293 ELQKRKAKLLSMLEEVDRRYRQYCDQMKAVVSSFEAVAGTGTAKVYSALASKAMSKHFRSLRDAIVGQI 361
                    89******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.7E-56230359IPR006563POX domain
PfamPF075262.1E-45236358IPR006563POX domain
PROSITE profilePS5007112.131407470IPR001356Homeobox domain
SMARTSM003891.5E-8410474IPR001356Homeobox domain
CDDcd000861.41E-10410471No hitNo description
SuperFamilySSF466891.03E-16411476IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27413476IPR009057Homeodomain-like
PfamPF059209.3E-18427466IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAGESPQEKS RNLVSSAGFA YLDASSNEKP TIHSHLMNQM QSFESNPELF NLTTGIDMLG  60
FPSKNLQERE NNLVMWKGLF IKPENQASSS SKTITGPASD FYQAEFNKPD FSGRFSETTG  120
ENLMVAPESG WQDNRLLVDD SSLRCVFPCE ANERPSQGLS LSLSSTRPSG IGLQSFEMRE  180
SIHHHQPRQS NDIRYVSLNS RDGFFEKSAN LQQQQQILQD GYFGKAANIH QVHFQLKNSK  240
YLATAQELLN EICSLGSRQT DPSKQKLHKS NQWEDENGCP SQKQPLHNLD LLELQKRKAK  300
LLSMLEEVDR RYRQYCDQMK AVVSSFEAVA GTGTAKVYSA LASKAMSKHF RSLRDAIVGQ  360
IKATKKAMGE KDPVAPGTTR GETPRLRLLD QTLRQQRAFQ QMSMMESHPW RPQRGLPERS  420
VSLLRAWLFE HFLHPYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYLEEV  480
KEQDNMASSD GGSSHGGDNG RPNQSHKSNQ NAQPNSEDHK PTHDQLVRDD SESLSSIINN  540
PDKNDHSKAG RNNHNHHHRH EQQQLQQQLQ QQQQQLGRVA EPFGAIDLDF SAYNQHTAST  600
VSFTNDGIQQ NLGNGVSLTL GLQQHGGSGV NLSSFSPASH NSLFFTRDHI EDCQSIQYSM  660
SLDGEGQTLP YRNLMGAQLL HDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-15416474563Homeobox protein Meis2
3k2a_B4e-15416474563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275694.10.0PREDICTED: homeobox protein BEL1 homolog
TrEMBLA0A1U8B4E30.0A0A1U8B4E3_NELNU; homeobox protein BEL1 homolog
STRINGXP_010275694.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-122TALE family protein