PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019613-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 353aa MW: 37476.7 Da PI: 8.6651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019613-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.3e-12	287	332	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av++Ik Lq NNU_019613-RA 287 SIAERERRTRISEKLKKLQELVPNM----DKQTNTADMLDLAVQHIKGLQ 332 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.469	281	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-15	284	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.55E-13	285	336	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-15	286	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-13	287	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	287	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MFPSPNRPLG PPSNLTRYGS APGSLITSVV NSVVGGSEQE FSAAVGSETL MGRYFSGDSS 60 SLTTESSCKA NNVASETKDA AYRSERAATS SGLERSYGLN EIAVGDLAAV SNLRASGSSP 120 LIRHSSSPAG FLNHLMADNG FSISRGIGSY SSQSGTNSSH GMANGRLKSQ LSFTRQDSLS 180 QISEVGESVV GGCSSDDGTG KVGHSYGSGT FTMGSWDDTN SIVFSSSSKR AKTINGDIVT 240 SISGIDPQFS LPRNIEMATV EKLLQLQQDS VPCKIRAKRG CATHPRSIAE RERRTRISEK 300 LKKLQELVPN MDKQTNTADM LDLAVQHIKG LQNQVQKLNK DLENCNCGCK KST

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MFPSPNRPLG PPSNLTRYGS APGSLITSVV NSVVGGSEQE FSAAVGSETL MGRYFSGDSS  60
SLTTESSCKA NNVASETKDA AYRSERAATS SGLERSYGLN EIAVGDLAAV SNLRASGSSP  120
LIRHSSSPAG FLNHLMADNG FSISRGIGSY SSQSGTNSSH GMANGRLKSQ LSFTRQDSLS  180
QISEVGESVV GGCSSDDGTG KVGHSYGSGT FTMGSWDDTN SIVFSSSSKR AKTINGDIVT  240
SISGIDPQFS LPRNIEMATV EKLLQLQQDS VPCKIRAKRG CATHPRSIAE RERRTRISEK  300
LKKLQELVPN MDKQTNTADM LDLAVQHIKG LQNQVQKLNK DLENCNCGCK KST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275943.1	0.0	PREDICTED: transcription factor bHLH128-like
Swissprot	Q8H102	5e-90	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A1U8BH64	0.0	A0A1U8BH64_NELNU; transcription factor bHLH128-like
STRING	XP_010275943.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	9e-82	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]