PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019690-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 1023aa MW: 113423 Da PI: 6.9192

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019690-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.7	5.1e-41	160	237	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ NNU_019690-RA 160 VCQVKDCGADLSNAKDYHRRHKVCEMHSKASKALVDNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 237 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.8E-33	155	222	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.223	158	235	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.58E-38	159	240	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.7E-30	161	234	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.97E-9	789	906	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.4E-7	791	907	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.84E-8	795	905	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence Send to blast
MEARIGGEFH HFYGQGASGI VLEEKDWMGV GRRSLEWDLN DWKWDGDLFI SSPLNSVPSD 60 CRGRHLFPGS SGIPTAGGSS NSSSSCSDEI NPGSEKGKRE LEKRRRVIVV EDEELNDEAG 120 SLTLKLGGHG YPITEADISN WDGKNGKKTK LLGTTSNRAV CQVKDCGADL SNAKDYHRRH 180 KVCEMHSKAS KALVDNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTHPETV 240 VNGSSLNDEQ ATNSSDQTKD QDLLSHLLRN LASFAGAVDG RNISGLLQDS QDPLKVGTSV 300 GKSSEKVAPL LTNGADTTRL VGSTSKINCN GAQGPQIGSS DHCFGASTAV MPQKVMVTED 360 ARVGVLQVVS SQKSTTLFPM KHGNPSKGTQ SMARRTKLNN IDLNNIYNDS QDCIEDAEGS 420 QAPALDFPTW MQQDSHQSSP PQASRNSDSA SAQSPSSSSG DTQSRTDRIV FKLFGKDPSD 480 FPLVLRAQIV DWLSHSPTDM ESYIRPGCII LTVYLRLQDS TWDEICGDLS SSLSRLLDAS 540 DGSFWRTGWV YARVQHRIAF VYNGQIVLDT PLPLKTHNHC RISSIAPIAV TVSEKARFIV 600 KGFNLSRPTT RLLCALEGNY LVQEATRDLV VSNEIFKEQD EFQCLRFDSS IPDVIGRGFI 660 EVEDHGLSSS FFPFIVAEQD VCSEIRMLES VIEEAKSEND AQRRTEKIEA KNQALDFIHE 720 MGWLLHRTHM RSRLGHMDPN LDAFSFKRFR LIMEFSMDHG WCAVVKKLLD IVFKGNVDVE 780 EHPSVELALS EMGLLHRAVR RNCKPLVELL LRYIPDNSDG AESKYNQQGV RVFDGFLFRP 840 DVVGPAGLTP LHVAASRDGC ENVLDALTDD PGMVGVDAWK NARDNTGFTP EDYARLRGHY 900 SYIHLVHKKA KKPEAGHVVL DIPGVLPDCN NNQKQMDGLP VGKGTSFQID KTKLAVSRYC 960 KACDQRLASY GTTSRSLVYR PAMLSMVAIA AVCVCVALLF KSSPEVLCVF PPFRWELLDY 1020 GPM

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence Send to blast

MEARIGGEFH HFYGQGASGI VLEEKDWMGV GRRSLEWDLN DWKWDGDLFI SSPLNSVPSD  60
CRGRHLFPGS SGIPTAGGSS NSSSSCSDEI NPGSEKGKRE LEKRRRVIVV EDEELNDEAG  120
SLTLKLGGHG YPITEADISN WDGKNGKKTK LLGTTSNRAV CQVKDCGADL SNAKDYHRRH  180
KVCEMHSKAS KALVDNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTHPETV  240
VNGSSLNDEQ ATNSSDQTKD QDLLSHLLRN LASFAGAVDG RNISGLLQDS QDPLKVGTSV  300
GKSSEKVAPL LTNGADTTRL VGSTSKINCN GAQGPQIGSS DHCFGASTAV MPQKVMVTED  360
ARVGVLQVVS SQKSTTLFPM KHGNPSKGTQ SMARRTKLNN IDLNNIYNDS QDCIEDAEGS  420
QAPALDFPTW MQQDSHQSSP PQASRNSDSA SAQSPSSSSG DTQSRTDRIV FKLFGKDPSD  480
FPLVLRAQIV DWLSHSPTDM ESYIRPGCII LTVYLRLQDS TWDEICGDLS SSLSRLLDAS  540
DGSFWRTGWV YARVQHRIAF VYNGQIVLDT PLPLKTHNHC RISSIAPIAV TVSEKARFIV  600
KGFNLSRPTT RLLCALEGNY LVQEATRDLV VSNEIFKEQD EFQCLRFDSS IPDVIGRGFI  660
EVEDHGLSSS FFPFIVAEQD VCSEIRMLES VIEEAKSEND AQRRTEKIEA KNQALDFIHE  720
MGWLLHRTHM RSRLGHMDPN LDAFSFKRFR LIMEFSMDHG WCAVVKKLLD IVFKGNVDVE  780
EHPSVELALS EMGLLHRAVR RNCKPLVELL LRYIPDNSDG AESKYNQQGV RVFDGFLFRP  840
DVVGPAGLTP LHVAASRDGC ENVLDALTDD PGMVGVDAWK NARDNTGFTP EDYARLRGHY  900
SYIHLVHKKA KKPEAGHVVL DIPGVLPDCN NNQKQMDGLP VGKGTSFQID KTKLAVSRYC  960
KACDQRLASY GTTSRSLVYR PAMLSMVAIA AVCVCVALLF KSSPEVLCVF PPFRWELLDY  1020
GPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	160	234	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	106	KRRRV
2	229	235	KRRRKTH

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00603	PBM	Transfer from AT2G47070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276543.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1U8B6F9	0.0	A0A1U8B6F9_NELNU; squamosa promoter-binding-like protein 1
STRING	XP_010276543.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]