PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019738-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 454aa    MW: 49903.5 Da    PI: 6.1995
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019738-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.63.9e-116894483374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lLl+cAeavs ++l +a+ lL ++selasp g++ +R+aayf+eAL+ar+ +s+ ++y+ l+ ++ +  + ++  +al+ ++ +sP++kfsh+ta
  NNU_019738-RA  89 GLLLQCAEAVSMDNLDEASGLLPEISELASPFGSSPERVAAYFAEALQARIISSCLGMYSPLNIKTLTLAQNQRICSALQSYNSISPLIKFSHFTA 184
                    58******************************************************************999************************* PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    NqaI +a+e e+rvH+iD+di+qGlQWp L++ LasR+++  s+RiTgvgs    s e le+tg+rL++fA++lg+pfef++l  k  +  +l++L
  NNU_019738-RA 185 NQAIFQALEAEDRVHVIDLDIMQGLQWPGLFHILASRSRKIRSMRITGVGS----SIELLEATGRRLSDFANSLGLPFEFHALEGKVGNITDLSRL 276
                    ***************************************************....9**************************988888899***** PP

           GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                    + +++Ea++V++++  h l+d ++s       +L+l++ l+Pk++++veq+++h s++Fl rf+eal+yysalfd+l  +l+ +s er+ vE++l+
  NNU_019738-RA 277 APRQHEATVVHWMH--HCLYDITGSDLG----TLRLLNLLKPKLITIVEQDLSH-SGRFLGRFVEALHYYSALFDALGDGLGGDSVERHQVEQQLF 365
                    ************99..777777777777....9*********************.899************************************** PP

           GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    g ei+n+va  g +r+ + + +e+W + l++ GF+pv+l+ + a+qa+lll +++++gy++ eesg+l lgWkd +L+++SaW+
  NNU_019738-RA 366 GSEIRNIVAVGGPKRTGEVK-VERWADELRRIGFRPVSLGGNPAAQASLLLGMFPWKGYTLVEESGCLKLGWKDLSLLTASAWQ 448
                    **************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.39261428IPR005202Transcription factor GRAS
PfamPF035141.4E-11389448IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLQSLRLQSS INANPNPNST MRPKRSDRES HAGDSTGDNE DNQARKRFNF GRNLSGEATV  60
SGEKSVRHED EAEEEIVIGG ESSGLRLLGL LLQCAEAVSM DNLDEASGLL PEISELASPF  120
GSSPERVAAY FAEALQARII SSCLGMYSPL NIKTLTLAQN QRICSALQSY NSISPLIKFS  180
HFTANQAIFQ ALEAEDRVHV IDLDIMQGLQ WPGLFHILAS RSRKIRSMRI TGVGSSIELL  240
EATGRRLSDF ANSLGLPFEF HALEGKVGNI TDLSRLAPRQ HEATVVHWMH HCLYDITGSD  300
LGTLRLLNLL KPKLITIVEQ DLSHSGRFLG RFVEALHYYS ALFDALGDGL GGDSVERHQV  360
EQQLFGSEIR NIVAVGGPKR TGEVKVERWA DELRRIGFRP VSLGGNPAAQ ASLLLGMFPW  420
KGYTLVEESG CLKLGWKDLS LLTASAWQPS DQSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1669344925380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276198.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1U8B5N10.0A0A1U8B5N1_NELNU; scarecrow-like protein 23
STRINGXP_010276198.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-163GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]