PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019806-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 905aa    MW: 100859 Da    PI: 6.3427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019806-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07448469527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                    lC+++a+ G+C +G++C+FaHg+
  NNU_019806-RA 448 LCCYYAQ-GFCGRGESCPFAHGQ 469
                    8******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.657443470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5444471IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4445469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5448470IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5448469IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030393.403564905IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.109.1E-117578899IPR011989Armadillo-like helical
SuperFamilySSF483711.37E-104582899IPR016024Armadillo-type fold
SMARTSM000256.8E-4586621IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.267586621IPR001313Pumilio RNA-binding repeat
PfamPF008061.4E-4587620IPR001313Pumilio RNA-binding repeat
CDDcd079206.85E-135589899IPR033712Pumilio, RNA binding domain
SMARTSM000251.8E-11622657IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.957622657IPR001313Pumilio RNA-binding repeat
PfamPF008064.4E-12622656IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.177658697IPR001313Pumilio RNA-binding repeat
SMARTSM000250.61661697IPR001313Pumilio RNA-binding repeat
PfamPF008062.6E-5666694IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503024.604698721IPR001313Pumilio RNA-binding repeat
SMARTSM000250.39698733IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.204733769IPR001313Pumilio RNA-binding repeat
SMARTSM000251.2E-7734769IPR001313Pumilio RNA-binding repeat
PfamPF008065.7E-9738768IPR001313Pumilio RNA-binding repeat
SMARTSM000257.8770805IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.757770805IPR001313Pumilio RNA-binding repeat
PfamPF008064.0E-4773793IPR001313Pumilio RNA-binding repeat
SMARTSM000250.081806841IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.827806841IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.434842879IPR001313Pumilio RNA-binding repeat
SMARTSM000251.9844879IPR001313Pumilio RNA-binding repeat
PfamPF008067.6E-4849869IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
TDCLEGIVCG SALPSRAASL RQREKGFKLP ATCEMEGGIE QDYDEFEMLL GEIPNATSEN  60
PQAESGRINS PLVAERIPPE EGEGKSSSSA SFANFYHAPE AASSGSNSAF YDGLAFERPS  120
TTCLNYSQVL TDEKLQPNRN LSGGKIILKN AHQSPVKNVD HDDSNLPDDQ SLTSAFAELS  180
FKDGVMMEAP DSQLVSHKTL ENCTFLLEGQ YPNCIKKPLA SLESGGVVIP ASPNAPNGMN  240
VVYPVVNDLN KFNVGMNGQV NTKFLKLNAQ ELNKQYPRSH QLLENLSCDL GEQLQRLQMY  300
SPSTPLAAGM QSFQVLQNIP VPGVDFPVAP FQQQYFMEAQ SPLPYMQPQP LNRSHITWRQ  360
LEEERYCRMH QQYLYLQQLC NQGSENHVPS QASGNVAIGS IAGSQRQPYF EIPISHQLEQ  420
AGRGPFWNNA AVPRRFNSPD LTLVSSGLCC YYAQGFCGRG ESCPFAHGQK QTSATSLGCR  480
PFTARNLEPV KVLDKVVKQN FPEKILTRSH GLNSIRTIKP CSDVGNESLN HGKLMNGHYQ  540
YHPSLLNVAS FQLDDRNSQG STPDTADLRY NNNPKSPSQK YNSVDEVIGR IYLIAKDQHG  600
CRFLQRKFTE GTKQDVDKIF LEIIGHIVEL MTDPFGNYLV QKLLEVCDED QKMQILHAIT  660
RKPGDLVRIS CDMHGTRAVQ KLIETLNTLE QVSMVVSSLK PGIVMLIKNM NGNHVAARCL  720
QYLMPEYCEF LFEAATSHCV ELATDRHGCC VLQKCLSHSD GEQRRQLICE ITSNALMLSQ  780
DPFGNYVVQY VFELQVPWAI MDVLDQLEGN YGYLSMQKYS SNVVEKCLKY AGEELRPHII  840
QELINYSQLD QILQDPYGNY VIQAALNHSK GGLHSALVEA IRPYVPVLRT SPYGKKVLSC  900
NSLKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_A5e-6958489830350Pumilio homology domain family member 4
4dzs_B5e-6958489830350Pumilio homology domain family member 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276394.10.0PREDICTED: uncharacterized protein LOC104611153 isoform X1
TrEMBLA0A1U8BHH10.0A0A1U8BHH1_NELNU; uncharacterized protein LOC104611153 isoform X1
STRINGXP_010276394.10.0(Nelumbo nucifera)