PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019826-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 415aa MW: 46450 Da PI: 6.954

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019826-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQkYRl NNU_019826-RA 46 KPRLKWTPELHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.381	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	5.1E-24	143	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MYHHHHHHGK TSFPSSTMSI PPERHLFLQN GNGRGDTGLI LSTDAKPRLK WTPELHERFI 60 EAVNQLGGAD KATPKTVLKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANM GTNKNVAGDR 120 ISEASGALMS NTSPSSQTNK NLQISEAIQI QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ 180 SVLEKAQETL GRQNLGSVEF DAAKMQFPEL VSKVSAECLN STFPELKELQ GLCLCPQQTQ 240 KMQPTDCSVD SCLTSCEGSQ KDQEIHNIEV GLRPYQSSAS LGLKEIVDDS RIEQPEPTWG 300 EDLNENKMFS SSIGRDAERI MFPMQRSCSS LSTTSRVQGE NRNASSSFAE ARTKEGNEDD 360 SFLNQNSARR PVANLENDMS KGFRLPHLTA KLDLNTQEND STTHKQFDLN GFSWT

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MYHHHHHHGK TSFPSSTMSI PPERHLFLQN GNGRGDTGLI LSTDAKPRLK WTPELHERFI  60
EAVNQLGGAD KATPKTVLKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANM GTNKNVAGDR  120
ISEASGALMS NTSPSSQTNK NLQISEAIQI QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ  180
SVLEKAQETL GRQNLGSVEF DAAKMQFPEL VSKVSAECLN STFPELKELQ GLCLCPQQTQ  240
KMQPTDCSVD SCLTSCEGSQ KDQEIHNIEV GLRPYQSSAS LGLKEIVDDS RIEQPEPTWG  300
EDLNENKMFS SSIGRDAERI MFPMQRSCSS LSTTSRVQGE NRNASSSFAE ARTKEGNEDD  360
SFLNQNSARR PVANLENDMS KGFRLPHLTA KLDLNTQEND STTHKQFDLN GFSWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-22	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-22	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276422.1	0.0	PREDICTED: myb-related protein 2-like
Refseq	XP_019055601.1	0.0	PREDICTED: myb-related protein 2-like
Swissprot	Q9SQQ9	1e-134	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1U8QBU9	0.0	A0A1U8QBU9_NELNU; myb-related protein 2-like
STRING	XP_010276422.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-137	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]