PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019912-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 574aa MW: 66192.6 Da PI: 8.9641

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019912-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a l+++k+ +w+vt + ++HnHel NNU_019912-RA 62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKASNESKPQRNRKSSRCGCQAYLRISKTMelgVPEWRVTGFANHHNHELL 155 6************9998877356667999*************999***************998777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.3E-8	207	264	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.223	450	485	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-7	455	483	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-6	460	487	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MSEEARQMIE AYNDPSDQRS LSLDDTSSTE ESPENTRLSL ETSNDAIPYI GQRFLTHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS 120 RCGCQAYLRI SKTMELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRIFMF 180 AKTGISVQQM MKLMELEKRV EPGYLPFTEK DVRNLLQSFR KAFLRFMNEK PPQTILTDQN 240 MCLKEAIAVE MPNTKHALCI WLIVAKFPSW FNAVLGERYN EWKAEFYRLY NLESIEEFEL 300 GWRDMMNSFG LHTNRHIANL FSLRTLWALP YLRSNFFAGM TTTGQSKSIN AFIQRFLSAQ 360 TRLAHFVEQV PVAVDFKDQA GEQQTMQQNL QNICLKTGAP MESHAATVLT PYAFCKLQEE 420 LVLAAHYASF QMDDGSFHVR HHTKLEGGRK VIWIPREGII TCSCHQFEFS GILCRHALRV 480 LSTGNCFQIP ERYLPLRWRR INTSPTKLLQ TTPNDHAERV QALQSMVSTL ITESAKSRER 540 LDMATEQISI LLARIREQPV LAQGAKDLTI HKTH

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MSEEARQMIE AYNDPSDQRS LSLDDTSSTE ESPENTRLSL ETSNDAIPYI GQRFLTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS  120
RCGCQAYLRI SKTMELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRIFMF  180
AKTGISVQQM MKLMELEKRV EPGYLPFTEK DVRNLLQSFR KAFLRFMNEK PPQTILTDQN  240
MCLKEAIAVE MPNTKHALCI WLIVAKFPSW FNAVLGERYN EWKAEFYRLY NLESIEEFEL  300
GWRDMMNSFG LHTNRHIANL FSLRTLWALP YLRSNFFAGM TTTGQSKSIN AFIQRFLSAQ  360
TRLAHFVEQV PVAVDFKDQA GEQQTMQQNL QNICLKTGAP MESHAATVLT PYAFCKLQEE  420
LVLAAHYASF QMDDGSFHVR HHTKLEGGRK VIWIPREGII TCSCHQFEFS GILCRHALRV  480
LSTGNCFQIP ERYLPLRWRR INTSPTKLLQ TTPNDHAERV QALQSMVSTL ITESAKSRER  540
LDMATEQISI LLARIREQPV LAQGAKDLTI HKTH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027363108.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A103XML8	0.0	A0A103XML8_CYNCS; FAR1 DNA binding domain-containing protein
STRING	XP_010276293.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]