PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019955-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 269aa    MW: 30051.8 Da    PI: 5.261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019955-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-164790146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w++
    NNU_019955-RA 47 RGNISKDEEDLIIKLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 90
                     7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-112754IPR009057Homeodomain-like
SuperFamilySSF466892.63E-192797IPR009057Homeodomain-like
PROSITE profilePS500904.0772841IPR017877Myb-like domain
PROSITE profilePS5129425.7834296IPR017930Myb domain
SMARTSM007171.9E-154694IPR001005SANT/Myb domain
PfamPF002492.4E-144790IPR001005SANT/Myb domain
CDDcd001671.00E-115192No hitNo description
Gene3DG3DSA:1.10.10.608.4E-215592IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEKGNGESSL REQTIDNGGF CYSVGLKRCG KSCRLRWLNY LRPDIKRGNI SKDEEDLIIK  60
LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT KLSKKIQGQT PKIRINGSVE KKGASESSIS  120
SETPPVIRTK ASRCTRVFLP RKEGNEITKK NGESSRDCSR PSSSFQQVDD DSLDMLVGFD  180
MNELLFMSDD LNSNCLQICS DGIRGSSNLV TGEDGWNISS WYLDDPFSTD TDVMLQGGSG  240
NEAILENCSI DTLQPDEAFE LKMLASFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-19289640108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276719.11e-177PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U8BAH81e-176A0A1U8BAH8_NELNU; transcription repressor MYB6-like
STRINGXP_010276719.11e-177(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-42MYB family protein