PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019998-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 255aa MW: 28833.7 Da PI: 9.5007

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019998-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.1	1.8e-14	75	127	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++Ns ++ Lr+llP+ + + +K s +++ ++ +YI +Lq NNU_019998-RA 75 KKLNHNASERDRRKKMNSLYSSLRSLLPEtD---QTTKQSIPATVSRVLKYIPELQ 127 6789***********************77...*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.113	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-13	75	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-14	75	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-4	75	131	No hit	No description
Pfam	PF00010	1.1E-11	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-9	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MLSLSPQFSI LGWPSEADTS PEQKSWMSDN PFVNCNFREK QASESFFLFT SSRPEAECNE 60 FKSCGTTSRD PAMVKKLNHN ASERDRRKKM NSLYSSLRSL LPETDQTTKQ SIPATVSRVL 120 KYIPELQKRV ERLKQRKQEI LSSITRHRDH NHQEKRRKAT VQTSSPTVSA SRAGDGEIVI 180 QICAVKVKKS PLSEVLLHLE QEGLQVLNAS AFATFGETAF YNLHLQVWAR SEFPNTVIPN 240 KEETTVPGPD ILVAV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019055634.1	1e-168	PREDICTED: transcription factor ORG2-like
TrEMBL	A0A1U8QA18	1e-166	A0A1U8QA18_NELNU; transcription factor ORG2-like
STRING	XP_010276688.1	1e-168	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	8e-52	bHLH family protein