PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020005-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SRS

Protein Properties

Length: 465aa MW: 47956.1 Da PI: 7.7552

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020005-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.2	9.1e-68	255	414	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 s++++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++aa++ a +s +++a k++r s++++++s+t++s++++++ NNU_020005-RA 255 STATTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQLSATAAAAAAGSSVSTSAVKKPRLI-SSQTTTASHTSTSNTTPPR 349 56789********************************************99999999999999*****86.7888999999***** PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++tss lP +++++avf+cvrv++v+dge+e+aYq+ v+igGhvfkG+LydqG++ NNU_020005-RA 350 SFDTSSshqdasfretLPGQIRAPAVFKCVRVTAVEDGEDEYAYQAIVKIGGHVFKGFLYDQGVD 414 999******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-61	258	414	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.8E-27	259	301	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.0E-29	366	413	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MKMLVTAIIP FDVEKSFSVS MKNAGFEVGT PWSKGTLDLL AEAAVVATTR RLPSDSGAFA 60 DWVASSSTTG RADDLSLGFN AGAAGGGHGS ATATGGGGGG PGAGWSSSTR QISYGLPPEM 120 GMVGLRDVLV VAPASSFHHN QQHEPILSDH HHQINNSNAA TALGVGVGVG VIPLLTAAPC 180 LAPANVGIDD GDNMNNRNRG CGINLWQNQQ PHHGNYLKKP MLIDHNNSEN LLNSSNSGGC 240 GAAGSGGLGG TTTTSTATTC QDCGNQAKKD CSHRRCRTCC KSRGFDCSTH VKSTWVPAAR 300 RRERQLSATA AAAAAGSSVS TSAVKKPRLI SSQTTTASHT STSNTTPPRS FDTSSSHQDA 360 SFRETLPGQI RAPAVFKCVR VTAVEDGEDE YAYQAIVKIG GHVFKGFLYD QGVDGRDGFP 420 NISELHLGGG RNGNSSSPNM LDPSDVYAAS GGGLLGGTAY GNPIN

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MKMLVTAIIP FDVEKSFSVS MKNAGFEVGT PWSKGTLDLL AEAAVVATTR RLPSDSGAFA  60
DWVASSSTTG RADDLSLGFN AGAAGGGHGS ATATGGGGGG PGAGWSSSTR QISYGLPPEM  120
GMVGLRDVLV VAPASSFHHN QQHEPILSDH HHQINNSNAA TALGVGVGVG VIPLLTAAPC  180
LAPANVGIDD GDNMNNRNRG CGINLWQNQQ PHHGNYLKKP MLIDHNNSEN LLNSSNSGGC  240
GAAGSGGLGG TTTTSTATTC QDCGNQAKKD CSHRRCRTCC KSRGFDCSTH VKSTWVPAAR  300
RRERQLSATA AAAAAGSSVS TSAVKKPRLI SSQTTTASHT STSNTTPPRS FDTSSSHQDA  360
SFRETLPGQI RAPAVFKCVR VTAVEDGEDE YAYQAIVKIG GHVFKGFLYD QGVDGRDGFP  420
NISELHLGGG RNGNSSSPNM LDPSDVYAAS GGGLLGGTAY GNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276642.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	4e-89	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1U8BIU7	0.0	A0A1U8BIU7_NELNU; protein LATERAL ROOT PRIMORDIUM 1-like
STRING	XP_010276642.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-67	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]