PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020107-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Protein Properties

Length: 113aa MW: 13034.2 Da PI: 8.3063

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020107-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.6	1.7e-11	33	85	37	94
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 t+ +++sW++++ +++ +r+ ++ W++Fv +n+Lk gD +vF+l+++s l++ NNU_020107-RA 33 TF---RNKSWKMYYYGDRGCKRFNMA--WRHFVIDNKLKIGDGCVFELMESSPNILRF 85 44...459****558888887666..*****************99765544444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	2.10E-9	14	91	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.0E-11	28	91	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-11	31	91	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.4E-9	32	85	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.305	35	93	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MRNYGCCAIY PVQVLPSKLQ QYLPSAMVPV ELTFRNKSWK MYYYGDRGCK RFNMAWRHFV 60 IDNKLKIGDG CVFELMESSP NILRFKVQVL NGDLPSDFIS NIGESESSPI IID

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276851.1	2e-69	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X1
Refseq	XP_010276852.1	2e-69	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2
Refseq	XP_019055647.1	2e-69	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X1
TrEMBL	A0A1U8BIK3	4e-68	A0A1U8BIK3_NELNU; B3 domain-containing protein Os04g0386900-like isoform X2
TrEMBL	A0A1U8QAR1	4e-68	A0A1U8QAR1_NELNU; B3 domain-containing protein Os04g0386900-like isoform X1
STRING	XP_010276851.1	6e-69	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	3e-07	B3 family protein